BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0439.p         (92 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGpA247_1 [V] COG1136 ABC-type antimicrobial peptide transport s...   117   9e-27
ybjZ_1 [V] COG1136 ABC-type antimicrobial peptide transport syst...   106   2e-23
ECs0965_1 [V] COG1136 ABC-type antimicrobial peptide transport s...   105   2e-23
ZybjZ_1 [V] COG1136 ABC-type antimicrobial peptide transport sys...   105   2e-23
STM0942_1 [V] COG1136 ABC-type antimicrobial peptide transport s...   101   4e-22

>AGpA247_1 [V] COG1136 ABC-type antimicrobial peptide transport system,
          ATPase component Atu Agrobacterium tumefaciens strain
          C58 (Cereon)
          Length = 255

 Score =  117 bits (292), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 65/77 (84%)

Query: 1  MTTPLLQLRALRRDFPAGDDTITVLNDVNLDIAAGEMVAIVGASGSGKSTLMNILGCLDK 60
          MT PL+++R + R FPAGD+ + VL DV+LDI AGEM+AI+GASGSGKSTLMNILGCLD+
Sbjct: 1  MTEPLIRVRGVSRAFPAGDEMVRVLKDVDLDIEAGEMMAIIGASGSGKSTLMNILGCLDR 60

Query: 61 PSAGSYLVAGRETGKLA 77
          P+ GSY + GRET K+A
Sbjct: 61 PTTGSYWIEGRETSKMA 77


>ybjZ_1 [V] COG1136 ABC-type antimicrobial peptide transport system,
          ATPase component Eco Escherichia coli K12
          Length = 253

 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 62/74 (83%)

Query: 3  TPLLQLRALRRDFPAGDDTITVLNDVNLDIAAGEMVAIVGASGSGKSTLMNILGCLDKPS 62
          TPLL+L+ +RR +PAGD+ + VL  ++LDI AGEMVAIVGASGSGKSTLMNILGCLDK +
Sbjct: 2  TPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKAT 61

Query: 63 AGSYLVAGRETGKL 76
          +G+Y VAG++   L
Sbjct: 62 SGTYRVAGQDVATL 75


>ECs0965_1 [V] COG1136 ABC-type antimicrobial peptide transport system,
          ATPase component Ecs Escherichia coli O157:H7
          Length = 253

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 61/74 (82%)

Query: 3  TPLLQLRALRRDFPAGDDTITVLNDVNLDIAAGEMVAIVGASGSGKSTLMNILGCLDKPS 62
          TPLL+L+ +RR +PAGD+ + VL  + LDI AGEMVAIVGASGSGKSTLMNILGCLDK +
Sbjct: 2  TPLLELKDIRRSYPAGDEQVEVLKGITLDIYAGEMVAIVGASGSGKSTLMNILGCLDKAT 61

Query: 63 AGSYLVAGRETGKL 76
          +G+Y VAG++   L
Sbjct: 62 SGTYRVAGQDVATL 75


>ZybjZ_1 [V] COG1136 ABC-type antimicrobial peptide transport system,
          ATPase component EcZ Escherichia coli O157:H7 EDL933
          Length = 253

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 61/74 (82%)

Query: 3  TPLLQLRALRRDFPAGDDTITVLNDVNLDIAAGEMVAIVGASGSGKSTLMNILGCLDKPS 62
          TPLL+L+ +RR +PAGD+ + VL  + LDI AGEMVAIVGASGSGKSTLMNILGCLDK +
Sbjct: 2  TPLLELKDIRRSYPAGDEQVEVLKGITLDIYAGEMVAIVGASGSGKSTLMNILGCLDKAT 61

Query: 63 AGSYLVAGRETGKL 76
          +G+Y VAG++   L
Sbjct: 62 SGTYRVAGQDVATL 75


>STM0942_1 [V] COG1136 ABC-type antimicrobial peptide transport system,
          ATPase component Sty Salmonella typhimurium LT2
          Length = 253

 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 60/76 (78%)

Query: 3  TPLLQLRALRRDFPAGDDTITVLNDVNLDIAAGEMVAIVGASGSGKSTLMNILGCLDKPS 62
          T LL+L  + R +P+G++ + VL D++L I AGEMVAIVG SGSGKSTLMNILGCLDKP+
Sbjct: 2  TALLELCNVSRSYPSGEEQVAVLKDISLQIHAGEMVAIVGVSGSGKSTLMNILGCLDKPT 61

Query: 63 AGSYLVAGRETGKLAP 78
          +G+Y VAGR+   L P
Sbjct: 62 SGTYRVAGRDVSTLDP 77