BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0435.p         (89 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0374 [NU] COG1987 Flagellar biosynthesis pathway, component F...   110   7e-25
STM1980 [NU] COG1987 Flagellar biosynthesis pathway, component F...   102   3e-22
BU083 [NU] COG1987 Flagellar biosynthesis pathway, component Fli...   101   5e-22
BS_fliQ [NU] COG1987 Flagellar biosynthesis pathway, component F...    98   4e-21
YPO1820a [NU] COG1987 Flagellar biosynthesis pathway, component ...    98   5e-21

>RSp0374 [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Rso
          Ralstonia solanacearum
          Length = 89

 Score =  110 bits (275), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 70/89 (78%)

Query: 1  MTPESVMTMGRQAMEVTLLIAAPMLITALLIGLLVSIFQAATQINEQTLAFIPKLVGVFL 60
          MTPE V+ M RQAM+V ++I APML+ +L++GLLV++FQAATQ+NEQTL+FIPKL+ V  
Sbjct: 1  MTPEYVLNMARQAMQVAMMIGAPMLLVSLIVGLLVAVFQAATQLNEQTLSFIPKLLAVAA 60

Query: 61 ALIIAGPWMLTIILDYMHTMFSGIPAMVQ 89
           +I+AGPW+L +I+DY   + + IP  V 
Sbjct: 61 TMILAGPWVLGVIVDYTRDVLTNIPNYVN 89


>STM1980 [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Sty
          Salmonella typhimurium LT2
          Length = 89

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 75/88 (85%)

Query: 1  MTPESVMTMGRQAMEVTLLIAAPMLITALLIGLLVSIFQAATQINEQTLAFIPKLVGVFL 60
          MTPESVM MG +AM+V L +AAP+L+ AL+ GL++SI QAATQINE TL+FIPK+V VF+
Sbjct: 1  MTPESVMMMGTEAMKVALALAAPLLLVALITGLIISILQAATQINEMTLSFIPKIVAVFI 60

Query: 61 ALIIAGPWMLTIILDYMHTMFSGIPAMV 88
          A+I+AGPWML ++LDY+ T+FS +P ++
Sbjct: 61 AIIVAGPWMLNLLLDYVRTLFSNLPYII 88


>BU083 [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Buc
          Buchnera sp. APS
          Length = 89

 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 65/84 (77%)

Query: 1  MTPESVMTMGRQAMEVTLLIAAPMLITALLIGLLVSIFQAATQINEQTLAFIPKLVGVFL 60
          MT E VM +   AM+V L+IA+P+L+ AL+ GL++SI QAATQ+NEQTL+FIPK++ V  
Sbjct: 1  MTSEYVMELFYNAMKVALIIASPLLLAALISGLIISILQAATQVNEQTLSFIPKIISVLG 60

Query: 61 ALIIAGPWMLTIILDYMHTMFSGI 84
           + I GPWML ++LDYMH +F+ I
Sbjct: 61 VISILGPWMLGVMLDYMHNLFNNI 84


>BS_fliQ [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Bsu
          Bacillus subtilis
          Length = 89

 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 64/84 (76%)

Query: 1  MTPESVMTMGRQAMEVTLLIAAPMLITALLIGLLVSIFQAATQINEQTLAFIPKLVGVFL 60
          M+ E V++M  +A+ VTL+I+ P+L  ALL+GL+VSIFQA TQI EQTLAFIPK+V V L
Sbjct: 1  MSSEFVISMAEKAVYVTLMISGPLLAIALLVGLIVSIFQATTQIQEQTLAFIPKIVAVLL 60

Query: 61 ALIIAGPWMLTIILDYMHTMFSGI 84
          ALI  GPWML+ IL +   +FS +
Sbjct: 61 ALIFFGPWMLSTILSFTTELFSNL 84


>YPO1820a [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Ype
          Yersinia pestis
          Length = 89

 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/88 (57%), Positives = 72/88 (81%)

Query: 1  MTPESVMTMGRQAMEVTLLIAAPMLITALLIGLLVSIFQAATQINEQTLAFIPKLVGVFL 60
          MTPESVM +G +AM++ L +AAP+L+ AL+ GL+VS+ QAATQINE TL+FIPK++ VF 
Sbjct: 1  MTPESVMALGTEAMKIALALAAPLLLAALISGLIVSLLQAATQINEMTLSFIPKILAVFT 60

Query: 61 ALIIAGPWMLTIILDYMHTMFSGIPAMV 88
           ++IAGPWML +ILDYM  +F+ +P ++
Sbjct: 61 TMVIAGPWMLNLILDYMRNLFTSLPTLI 88