BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0423.p         (212 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal...    80   3e-15

>STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella
           typhimurium LT2
          Length = 521

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 12/202 (5%)

Query: 1   MKLSNVTIRARLWLGFGLLMILMLAMAASGIARLGQLNGQMKDVIHDKYPKTVVAGDIVD 60
           M L N+ IR++L++ FGL ++LM+  +A  +  L + N  M+++I + YP TV A  ++D
Sbjct: 1   MFLHNIKIRSKLFMAFGLFIVLMVVSSALSLFSLDRANTGMQNIITNDYPTTVKANLLID 60

Query: 61  QLN--LIARSVRNILLLKRE----PQIKSEYDRITGADRAIREDLAQLEKLLTDDDSRSA 114
             N  +IA   + ++LL  E       + E D I+    A+ ++L+       D  S+  
Sbjct: 61  NFNDFIIA---QQLMLLDEEGRWSQSSQKELDEISQRITALLDELSSNRH---DAASQKI 114

Query: 115 LKKLVTAQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMSAADALIKQQHDMM 174
           + ++  A+  Y E R ++L  +Q   ++ AI  ++     VQ         LI  Q   M
Sbjct: 115 ITEIREARQQYLESRFRILQDIQSHNRQAAIQEMMTRTVQVQKVYKDKVQELIAVQDAQM 174

Query: 175 KSAGDEVESNYVQARTLLLVLA 196
            +AG +VE ++   RTLL+ LA
Sbjct: 175 HNAGVQVEGDFKTNRTLLITLA 196