BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0416.p         (212 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sll0484 [V] COG1136 ABC-type antimicrobial peptide transport sys...    69   6e-12
BS_ytrB [V] COG1131 ABC-type multidrug transport system, ATPase ...    67   2e-11
SP0522 [V] COG1131 ABC-type multidrug transport system, ATPase c...    66   6e-11
L58125 [V] COG1131 ABC-type multidrug transport system, ATPase c...    65   1e-10
lin0744 [V] COG1131 ABC-type multidrug transport system, ATPase ...    64   2e-10

>sll0484 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase
           component Syn Synechocystis
          Length = 245

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 9/154 (5%)

Query: 28  DFSARI-TGGVTLVRGGDGRGKTTLLNLLGGLMPARDGVLELNGVRLDGEPE----NYRR 82
           D + R+  G V +++G  G GKTTLL L+GGL  A+ G L + G  L+G  +      RR
Sbjct: 43  DINLRLDEGEVVILKGPSGSGKTTLLTLMGGLRSAQSGSLRVFGQELNGAKKQDLVQVRR 102

Query: 83  QVFFIDPRTEAYDQMTPPEVFAALAQRYPHFD----HGLLPALTEGLSLTPHLEKKLFML 138
            + +I       + +T  +      + +P ++      L  A+ E + L  H+      L
Sbjct: 103 HIGYIFQAHNLLESLTARQNVQMAIELHPQYNAQQAKELSIAMLEAVGLGAHINYNPHNL 162

Query: 139 STGSKRKVYLAAAFAAHATLTLLDDPYASLDRAS 172
           S G K++V +A A  +H  + L D+P A+LD  S
Sbjct: 163 SGGQKQRVAIARALVSHPKMILADEPTAALDSKS 196


>BS_ytrB [V] COG1131 ABC-type multidrug transport system, ATPase component
           Bsu Bacillus subtilis
          Length = 292

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 4/200 (2%)

Query: 10  LLLVSRLNFSYPGLDLFQDFSARITGGVTL-VRGGDGRGKTTLLNLLGGLMPARDGVLEL 68
           ++ + +L+ +  G  + +D S  I  G    + G +G GKTT+L L+  ++ A  G +  
Sbjct: 1   MIELRQLSKAIDGNQVLKDVSLTIEKGEIFGLLGRNGSGKTTMLRLIQQIIFADSGTILF 60

Query: 69  NGVRLDGEPENYRRQVFFIDPRTEAYDQMTPPEVFAALAQRYPHFDHGLLPALTEGLSLT 128
           +GV +   P+  ++ + ++  +   YD+ T  ++   L + YP FD      L     + 
Sbjct: 61  DGVEIKKHPK-VKQNIIYMPVQNPFYDKYTYKQLVDILRRIYPKFDVTYANELMNRYEIP 119

Query: 129 PHLEKKLFMLSTGSKRKVYLAAAFAAHATLTLLDDPYASLDRASIQFVAATLNAHAADAD 188
               KK   LSTG K+++ L  +FAA   L LLD+P   +D  +   V   +    A+ D
Sbjct: 120 ET--KKYRELSTGLKKQLSLVLSFAARPALILLDEPTDGIDAVTRHDVLQLMVDEVAERD 177

Query: 189 QAWVVAMYETPEAVRLAGTI 208
            + ++  +   +  R+   I
Sbjct: 178 TSILITSHRLEDIERMCNRI 197


>SP0522 [V] COG1131 ABC-type multidrug transport system, ATPase component
           Spn Streptococcus pneumoniae TIGR4
          Length = 243

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 8/170 (4%)

Query: 10  LLLVSRLNFSYPGLDLFQDFSARITGG--VTLVRGGDGRGKTTLLNLLGGLMPARDGVLE 67
           +L +  L   Y  + + +D S  +  G  V L+ G +G GK+T +N + GL+    G + 
Sbjct: 1   MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLI-GLNGAGKSTTINEIIGLLAPYSGSIN 59

Query: 68  LNGVRLDGEPENYRRQVFFIDPRTEAYDQMTPPEVFAALAQRYPHFDHGLLPALTEGLSL 127
           +NG+ L G+  +YR+Q+ +I      Y+++T  E    +A  Y   +  +     E L  
Sbjct: 60  INGLTLQGDATSYRKQIGYIPETPSLYEELTLREHIETVAMAY-GIEQKVAFERVEPLLK 118

Query: 128 TPHLEKKL----FMLSTGSKRKVYLAAAFAAHATLTLLDDPYASLDRASI 173
              LE+KL       S G K+KV +  AF    +L ++D+P+  LD  +I
Sbjct: 119 MFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPFLGLDPLAI 168


>L58125 [V] COG1131 ABC-type multidrug transport system, ATPase component
           Lla Lactococcus lactis
          Length = 256

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 10/172 (5%)

Query: 10  LLLVSRLNFSYPGLDLFQDFSARITGG--VTLVRGGDGRGKTTLLNLLGGLMPARDGVLE 67
           +L V+ L   Y G  + +D +  I  G  V L+ G +G GK+T +  + GL+    G +E
Sbjct: 1   MLKVTNLTGGYLGHPVLKDLNFEIKEGELVGLI-GLNGAGKSTTIQEIIGLLTPYSGQIE 59

Query: 68  LNGVRLDGEPENYRRQVFFIDPRTEAYDQMTPPEVFAALAQRYP-----HFDHGLLPALT 122
           L+G+ L  + E YRR++ FI      Y+++T  E     A  Y       F+      L 
Sbjct: 60  LDGLTLQQDLEGYRRKIGFIPETPSLYEELTLREHIEVTALAYGISVDLAFERA--EKLL 117

Query: 123 EGLSLTPHLEKKLFMLSTGSKRKVYLAAAFAAHATLTLLDDPYASLDRASIQ 174
           E   L+  L+      S G K+KV +  AF    +L ++D+P+  LD  +IQ
Sbjct: 118 ETFRLSDKLDWFPVNFSKGMKQKVMIICAFLVEPSLYIVDEPFMGLDPLAIQ 169


>lin0744 [V] COG1131 ABC-type multidrug transport system, ATPase component
           Lin Listeria innocua
          Length = 229

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 84/173 (48%), Gaps = 10/173 (5%)

Query: 19  SYPGLDLFQ--DFSARITGGVTLVRGGDGRGKTTLLNLLGGLMPARDGVLEL-NGVRLDG 75
           SYP   + Q  DF A+  G + ++ G +G GKTTLL++L  L     G L+L N V +  
Sbjct: 10  SYPNKLVLQNVDFEAK-PGDMIVLTGENGSGKTTLLDMLANLKKPDSGKLQLDNEVFITS 68

Query: 76  EPENYRRQVFFIDPRTEAYDQMTPPEVFAALAQRYPHFDHGLLPALTEGLSLTPHLEKKL 135
           E    R+Q+ +++    A    T  E     A  + + D      L  G  ++  L  KL
Sbjct: 69  E---IRQQIAYLNNELYAKKSTTIEEFMKQHALLFENMDLDKWERLLSGWRISKRL--KL 123

Query: 136 FMLSTGSKRKVYLAAAFAAHATLTLLDDPYASLD-RASIQFVAATLNAHAADA 187
             LSTG   KV +A+  A  A + L D+P+AS+D  A  + + A ++    DA
Sbjct: 124 GELSTGMLMKVKIASVLARQAKVYLYDEPFASIDIMARSEVMKAIISETEPDA 176