BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0383.p (362 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1842 [N] COG1344 Flagellin and related hook-associated protei... 229 6e-60 TM0758 [N] COG1344 Flagellin and related hook-associated protein... 220 3e-57 VC2143 [N] COG1344 Flagellin and related hook-associated protein... 213 5e-55 VC2187 [N] COG1344 Flagellin and related hook-associated protein... 210 5e-54 VC2188 [N] COG1344 Flagellin and related hook-associated protein... 209 1e-53 >YPO1842 [N] COG1344 Flagellin and related hook-associated proteins Ype Yersinia pestis Length = 369 Score = 229 bits (585), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 174/403 (43%), Positives = 226/403 (56%), Gaps = 80/403 (19%) Query: 3 AVINTNIPSLNTQRNLNASQSSLNTSIQRLSSGLRVNSAKDDAAGLAIADRMNSQIKGLA 62 AVINTN SL TQ NLN SQSSL T+I+RLSSGLR+NSAKDDAAG AIA+R S IKGL Sbjct: 2 AVINTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 63 VAQRNANDGISMAQTAEGALSTVGDNLQRMRELAVQAANGTNSAQDRKTLNDEYTQLSQE 122 A RNANDGIS+AQT EG+L+ + +NLQR+REL VQA NG+NS+ D ++ DE + E Sbjct: 62 QAARNANDGISIAQTTEGSLNEINNNLQRVRELTVQAQNGSNSSSDLDSIQDEISLRLAE 121 Query: 123 VFRVLNGTSFNGQNLFTGVGQGASAGTGSNATNVSASLTLSFQVGANVQDNKLNDQITIT 182 + RV + T FNG+ + + + T+S QVGAN + I I Sbjct: 122 IDRVSDQTQFNGKKVL------------------AENTTMSIQVGAND-----GETIDIN 158 Query: 183 LDDLSNNSTIATVIGTSAKGLIGLG--DTSGVSTA-------QATYTSAKAALD----NL 229 L + + S +GLG SGVS A T + ALD + Sbjct: 159 LQKIDSKS-------------LGLGSYSVSGVSGALTSLTDTSVTGVTTTTALDFSDIST 205 Query: 230 FATGSSL-------SSSALASSAVT-------LQAAVDS--AKLSL-DQAVAAP------ 266 FA G+++ + A A V + VD+ K++ D A P Sbjct: 206 FAKGATVHGIGDVGTDGAYADGYVIRTTDGKQYKGEVDATNGKVTFADDANGDPIDDATK 265 Query: 267 ---SAQ-SDAQKA----IQNLDKAISLVSSKRAEFGAVQNRFSAVISNLQVSSENITASR 318 +AQ S A KA ++ LD AI V R+ GAVQNRF + ++NL + N+T++R Sbjct: 266 LEAAAQFSPAGKATASPLETLDDAIKQVDGLRSSLGAVQNRFESAVTNLNNTVTNLTSAR 325 Query: 319 SRIMDTDYAQETANLTRAQILQQAGTAMLSQANSAPQQVLSLL 361 SRI D DYA E +N++RAQILQQAGT++LSQAN PQ VLSLL Sbjct: 326 SRIEDADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLSLL 368 >TM0758 [N] COG1344 Flagellin and related hook-associated proteins Tma Thermotoga maritima Length = 387 Score = 220 bits (561), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 149/386 (38%), Positives = 219/386 (56%), Gaps = 29/386 (7%) Query: 5 INTNIPSLNTQRNLNASQSSLNTSIQRLSSGLRVNSAKDDAAGLAIADRMNSQIKGLAVA 64 IN NI +LN RN++ +Q S++ +++RLSSGLR+N A DDAAGLAI+++M QIKGL +A Sbjct: 3 INHNISALNAWRNISQTQYSMSKTLERLSSGLRINRAGDDAAGLAISEKMRGQIKGLNMA 62 Query: 65 QRNANDGISMAQTAEGALSTVGDNLQRMRELAVQAANGTNSAQDRKTLNDEYTQLSQEVF 124 +NA D IS+ QTAEGAL+ V LQRMRELAVQAA+ TN+ DR+ + E QL +E+ Sbjct: 63 IKNAQDAISLIQTAEGALTEVHSILQRMRELAVQAASDTNTDVDREQIQKEIDQLREEID 122 Query: 125 RVLNGTSFNGQNLFTGVGQG------ASAGTGSNATNV------SASL--TLSFQVGA-- 168 R+ T FN + L G + A TG N NV SA++ T +VG Sbjct: 123 RIARTTEFNTKKLLDGKLESFRSQVDAKVVTGGN-INVQLGSVSSAAVEGTYVIEVGQFN 181 Query: 169 NVQDNKLNDQITITLDDLSNNSTIATVIGTSAKG---------LIGLGDTSGVSTAQATY 219 + ++L+ +IT+ + + + +G++ G ++ + D G Sbjct: 182 GAETSELDVKITLFTAGGYSTTVVTITVGSATVGNINFTWDTDVLSINDFGGALPKNEVV 241 Query: 220 TSAKAALDNLFATGSSLSSSALASSAVTLQAAVD---SAKLSLDQAVAAPSAQSDAQKAI 276 SA ++ ++ + S L A+ + A +D +A L L + Q A++AI Sbjct: 242 DSAVVRVEAIYTSASQLIFQIGANEGHNMVAGIDDMSAAALGLTTVSLDVTTQDAAERAI 301 Query: 277 QNLDKAISLVSSKRAEFGAVQNRFSAVISNLQVSSENITASRSRIMDTDYAQETANLTRA 336 +D AI VS+ RA GAVQNR ISNL V++EN+TA+ SRI D D A+E T+ Sbjct: 302 MVVDAAIHRVSTARAALGAVQNRLEHTISNLGVAAENLTAAESRIRDADMAKEMMEFTKQ 361 Query: 337 QILQQAGTAMLSQANSAPQQVLSLLK 362 QIL Q+ AML+Q+N+ PQ VL L++ Sbjct: 362 QILLQSSMAMLAQSNTLPQNVLQLMR 387 >VC2143 [N] COG1344 Flagellin and related hook-associated proteins Vch Vibrio cholerae Length = 377 Score = 213 bits (542), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 154/387 (39%), Positives = 218/387 (56%), Gaps = 37/387 (9%) Query: 1 MAAVINTNIPSLNTQRNLNASQSSLNTSIQRLSSGLRVNSAKDDAAGLAIADRMNSQIKG 60 MA +NTN+ ++ QR L + ++ TS++RLSSG ++NSAKDDAAGL I++R+N Q +G Sbjct: 1 MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60 Query: 61 LAVAQRNANDGISMAQTAEGALSTVGDNLQRMRELAVQAANGTNSAQDRKTLNDEYTQLS 120 L VA RNANDGIS+AQTAEGA++ + LQRMR+L++Q+ANG+NS +R + +E T L+ Sbjct: 61 LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120 Query: 121 QEVFRVLNGTSFNGQNLFTGVGQGASAGTGSNATNVSASLTL------------SFQVGA 168 E+ R+ TSF G L G S G++ + LTL + V A Sbjct: 121 DELNRIAETTSFGGNKLLNGTFSTKSFQIGAD-NGEAVMLTLKDMRSDNRMMGGTSYVAA 179 Query: 169 NVQDNKLNDQ-----ITITLDDLSNNSTIATVIGTSAKGLIGLGDTSGVSTAQATYTSA- 222 +D Q IT TL D+ N TV +AK + + + Q A Sbjct: 180 EGKDKDWKVQAGANDITFTLKDIDGNDQTITV---NAKEGDDIEEVATYINGQTDMVKAS 236 Query: 223 ---KAALDNLFA-----TGSSLSSSALASSAVTLQAAVDSAKLSLDQAVAAPSAQSDAQK 274 K L +FA TG S LA A+ +QA ++D ++ AQ+ Sbjct: 237 VNEKGQL-QIFAGNNKVTGDVAFSGGLA-GALNMQAGTAETVDTID-----VTSVGGAQQ 289 Query: 275 AIQNLDKAISLVSSKRAEFGAVQNRFSAVISNLQVSSENITASRSRIMDTDYAQETANLT 334 ++ +D A+ V S RAE GA QNRF+ ISNL +EN+ AS+SRI DTD+A+ET LT Sbjct: 290 SVAVIDSALKYVDSHRAELGAFQNRFNHAISNLDNINENVNASKSRIKDTDFAKETTALT 349 Query: 335 RAQILQQAGTAMLSQANSAPQQVLSLL 361 ++QIL QA +++L+QA AP LSLL Sbjct: 350 KSQILSQASSSVLAQAKQAPNAALSLL 376 >VC2187 [N] COG1344 Flagellin and related hook-associated proteins Vch Vibrio cholerae Length = 377 Score = 210 bits (534), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 150/408 (36%), Positives = 215/408 (52%), Gaps = 79/408 (19%) Query: 1 MAAVINTNIPSLNTQRNLNASQSSLNTSIQRLSSGLRVNSAKDDAAGLAIADRMNSQIKG 60 MA +NTN+ ++ QR L ++ ++ +S++RLSSG ++NSAKDDAAGL I++R+N Q +G Sbjct: 1 MAVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRG 60 Query: 61 LAVAQRNANDGISMAQTAEGALSTVGDNLQRMRELAVQAANGTNSAQDRKTLNDEYTQLS 120 L VA RNANDGISMAQTAEGA+ + LQRMR+L++Q+ANG+NS DR + +E T L+ Sbjct: 61 LGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALN 120 Query: 121 QEVFRVLNGTSFNGQNLFTGVGQGASAGTGSNATNVSASLTLSFQVGA--------NVQD 172 E+ RV TSF G L G T SFQ+GA N++D Sbjct: 121 DELNRVAETTSFGGNKLLNGT-----------------FATKSFQIGADNGEAVMLNIKD 163 Query: 173 NKLND-------------------------QITITLDDLSNNSTIATVIGTSAKGLIGLG 207 + ++ +TITL D ++ + L Sbjct: 164 MRSDNALMGGKTYQAANGKDKNWGVEAGKTDLTITLKDKREGDVTISINAKEGDDIEEL- 222 Query: 208 DTSGVSTAQATYTSA-----KAALDN-----LFATGSSLSSSALASSAVT----LQAAVD 253 ATY + KA++D LF + + +A A+ + AA D Sbjct: 223 ---------ATYINGQTDMIKASVDEEGKLQLFTDNNRIDGAATFGGALAGELGIGAAQD 273 Query: 254 SAKLSLDQAVAAPSAQSDAQKAIQNLDKAISLVSSKRAEFGAVQNRFSAVISNLQVSSEN 313 +LD AQ+++ +D A+ V S RAE GA QNRF+ I+NL +EN Sbjct: 274 VTVDTLDVTTVGG-----AQESVAIVDAALKYVDSHRAELGAFQNRFNHAINNLDNINEN 328 Query: 314 ITASRSRIMDTDYAQETANLTRAQILQQAGTAMLSQANSAPQQVLSLL 361 + AS+SRI DTD+A+ET LT+AQIL QA +++L+QA AP L+LL Sbjct: 329 VNASKSRIKDTDFAKETTALTKAQILSQASSSVLAQAKQAPNSALALL 376 >VC2188 [N] COG1344 Flagellin and related hook-associated proteins Vch Vibrio cholerae Length = 379 Score = 209 bits (531), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 150/403 (37%), Positives = 214/403 (53%), Gaps = 65/403 (16%) Query: 1 MAAVINTNIPSLNTQRNLNASQSSLNTSIQRLSSGLRVNSAKDDAAGLAIADRMNSQIKG 60 M +NTN+ ++ QR L + LNTS++RLSSG R+NSAKDDAAGL I++R+ +Q +G Sbjct: 1 MTINVNTNVSAMTAQRYLTKATGELNTSMERLSSGNRINSAKDDAAGLQISNRLTAQSRG 60 Query: 61 LAVAQRNANDGISMAQTAEGALSTVGDNLQRMRELAVQAANGTNSAQDRKTLNDEYTQLS 120 L VA RNANDGIS+AQTAEGA++ LQRMR+LA+Q+ANGTNSA +R+ LN+E L Sbjct: 61 LDVAMRNANDGISIAQTAEGAMNESTSILQRMRDLALQSANGTNSASERQALNEESVALQ 120 Query: 121 QEVFRVLNGTSFNGQNLFTGVGQGASAGTGSNATNVSASLTLSFQVGANVQDNKLNDQIT 180 E+ R+ TSF G+ L G S G SFQ+G++ + + + Sbjct: 121 DELNRIAETTSFGGRKLLNG-----SFGEA------------SFQIGSSSGEAIIMGLTS 163 Query: 181 ITLDD--LSNNSTIATVIGTSAKGLIGLGDTSGVSTAQATYTSAKAALDNLFATGSSLSS 238 + DD + S IA T G+ T+ + T +A + ++ A Sbjct: 164 VRADDFRMGGQSFIAEQPKTKE---WGVPPTARDLKFEFTKKDGEAVVLDIIAK----DG 216 Query: 239 SALASSAVTLQAAVDSAKLSLDQA------VAAPSAQSD------------------AQK 274 + A + D K S+DQ VA P+ + + + Sbjct: 217 DDIEELATYINGQTDLFKASVDQEGKLQIFVAEPNIEGNFNISGGLATELGLNGGPGVKT 276 Query: 275 AIQNLD---------------KAISLVSSKRAEFGAVQNRFSAVISNLQVSSENITASRS 319 +Q++D A+ V S+RA+ GA QNR S ISNL EN+ AS+S Sbjct: 277 TVQDIDITSVGGSQNAVGIIDAALKYVDSQRADLGAKQNRLSHSISNLSNIQENVEASKS 336 Query: 320 RIMDTDYAQETANLTRAQILQQAGTAMLSQANSAPQQVLSLLK 362 RI DTD+A+ET LT++QILQQAGT++L+QA P +SLL+ Sbjct: 337 RIKDTDFAKETTQLTKSQILQQAGTSILAQAKQLPNSAISLLQ 379