BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0375.p         (129 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1311 [L] COG0305 Replicative DNA helicase Rso Ralstonia solan...   221   3e-58
PA4931 [L] COG0305 Replicative DNA helicase Pae Pseudomonas aeru...   191   3e-49
VC0371 [L] COG0305 Replicative DNA helicase Vch Vibrio cholerae       187   5e-48
XF0361 [L] COG0305 Replicative DNA helicase Xfa Xylella fastidio...   181   4e-46
ZdnaB [L] COG0305 Replicative DNA helicase EcZ Escherichia coli ...   174   4e-44

>RSc1311 [L] COG0305 Replicative DNA helicase Rso Ralstonia solanacearum
          Length = 473

 Score =  221 bits (563), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/120 (89%), Positives = 115/120 (95%), Gaps = 1/120 (0%)

Query: 1   MSGNGGSSSENRASEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRES 60
           MSG+GG   ENRA+EISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRES
Sbjct: 346 MSGSGGGG-ENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRES 404

Query: 61  GAIEQDADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLSFLGMYTKYDNYIG 120
           GAIEQDADVILFIYRD+VYNPDSPDKGTAEIIIGKQRNGPIG++RL+FLG YTK+DN+ G
Sbjct: 405 GAIEQDADVILFIYRDQVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTFLGEYTKFDNFTG 464


>PA4931 [L] COG0305 Replicative DNA helicase Pae Pseudomonas aeruginosa
          Length = 464

 Score =  191 bits (485), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 89/112 (79%), Positives = 103/112 (91%)

Query: 6   GSSSENRASEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQ 65
           GSS +NR +EISEISRSLK LAKE NCPVIALSQLNRSLEQRPNKRPV SDLRESGAIEQ
Sbjct: 342 GSSGDNRTNEISEISRSLKALAKEFNCPVIALSQLNRSLEQRPNKRPVNSDLRESGAIEQ 401

Query: 66  DADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLSFLGMYTKYDN 117
           DADVI+F+YRDEVY+P++  KG AEIIIGKQRNGPIG++RL+F+G YT+++N
Sbjct: 402 DADVIMFVYRDEVYHPETEFKGVAEIIIGKQRNGPIGTVRLAFIGKYTRFEN 453


>VC0371 [L] COG0305 Replicative DNA helicase Vch Vibrio cholerae
          Length = 468

 Score =  187 bits (475), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 102/112 (91%)

Query: 9   SENRASEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDAD 68
           ++NR  EI+EISRSLK LAKELN PV+ALSQLNRSLEQR +KRPV SDLRESG+IEQDAD
Sbjct: 351 TDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDAD 410

Query: 69  VILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLSFLGMYTKYDNYIG 120
           +I+FIYRDEVY+PDSP KGTAEIIIGKQRNGPIGS+RL+F G Y+++DNY G
Sbjct: 411 LIMFIYRDEVYHPDSPLKGTAEIIIGKQRNGPIGSVRLTFQGHYSRFDNYAG 462


>XF0361 [L] COG0305 Replicative DNA helicase Xfa Xylella fastidiosa 9a5c
          Length = 471

 Score =  181 bits (459), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 87/110 (79%), Positives = 97/110 (88%)

Query: 8   SSENRASEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 67
           +SENRA+EISEISRSLKGLAKELN PVIALSQLNRSLE R +K PVM+DLRESGAIEQDA
Sbjct: 352 NSENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKHPVMADLRESGAIEQDA 411

Query: 68  DVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLSFLGMYTKYDN 117
           D+I+FIYRDE YN DSPDKG AEIIIGK R+GP GS +L F G YT++DN
Sbjct: 412 DMIVFIYRDEYYNKDSPDKGLAEIIIGKHRSGPTGSCKLKFFGEYTRFDN 461


>ZdnaB [L] COG0305 Replicative DNA helicase EcZ Escherichia coli O157:H7
           EDL933
          Length = 471

 Score =  174 bits (441), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 83/112 (74%), Positives = 99/112 (88%)

Query: 9   SENRASEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDAD 68
           S+NR  EI+EISRSLK LAKELN PV+ALSQLNRSLEQR +KRPV SDLRESG+IEQDAD
Sbjct: 354 SDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDAD 413

Query: 69  VILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLSFLGMYTKYDNYIG 120
           +I+FIYRDEVY+ +S  KG AEIIIGKQRNGPIG++RL+F G ++++DNY G
Sbjct: 414 LIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNYAG 465