BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0346.p (487 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3894 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 437 e-122 RSc1294 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 271 3e-72 RSc1854 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 237 5e-62 PA5158 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 233 5e-61 VC1409 [MU] COG1538 Outer membrane protein Vch Vibrio cholerae 218 3e-56 >PA3894 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 496 Score = 437 bits (1124), Expect = e-122, Method: Compositional matrix adjust. Identities = 231/451 (51%), Positives = 305/451 (67%), Gaps = 1/451 (0%) Query: 21 IAGCADQGGIQPQAQLRDVAVLDAGQAIRQAASEAGWPQRAWWQAYGDAQLNQLVTRAVA 80 I+GC G I P+A D L AI+ AA EAGWPQ WW+ Y D QL+ + +A+ Sbjct: 15 ISGCVSTGDIAPEAATLDANALATDHAIQAAAREAGWPQAQWWKVYADPQLDAWIEKALD 74 Query: 81 GNPSMAVAAARVRQAQSMAVVAHAGELPSAQLDVSVGRKDWSDNVYYGAAFRDKLT-WNN 139 GNP +AVA ARVRQA+SMA + + E P + S+ R W D+ +YG + T WNN Sbjct: 75 GNPGLAVAHARVRQAKSMAGLVESIESPQIEGKGSLVRHRWPDDYFYGPGDLARTTSWNN 134 Query: 140 TATLGLSYNVDLWDRNKNATLRAEDEMHAVAADARAAQLPPPPPXLRTYVQLALQYGLLD 199 + +GL+Y +DLW R+++ + RA D H AA+AR AQL +R YVQL+LQY +D Sbjct: 135 STEIGLNYKLDLWGRDRSDSERAVDLAHMAAAEARQAQLELEGNIVRAYVQLSLQYAEMD 194 Query: 200 NTEAMLKEEQKILDLAQRRFKGGLGTQLEITQAESPLPETRRQMEALQENIALIRNQLAA 259 +AML++++ IL LAQRR +GG+GT E++QAE PLPET R++E + E I L RN LAA Sbjct: 195 IAKAMLQQQRDILALAQRRLRGGIGTHFEVSQAEVPLPETERRIEVIDEEIQLTRNLLAA 254 Query: 260 LLGAGPGAADGITRPTMQLQTALGLPSALPADLVGRRPDISAARWRVEAAAKGISVAKAA 319 L G GPG I RP++ L LPSALPA+L+GRRPD+ A RW+V A AKG+ VA+A Sbjct: 255 LAGKGPGEGRTIRRPSLNLAAQPSLPSALPAELLGRRPDVVARRWQVAALAKGVDVARAD 314 Query: 320 FYPNINLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAISLPIFEGGRLRGQLGAASAGYDI 379 FYPN++L+A +G +A GGG+ F + + GPA++LPIF+GGRLR QLG A+AGYD Sbjct: 315 FYPNVDLMASVGFSAVGGGMLEFFRSAKYTYSAGPAVTLPIFDGGRLRSQLGEAAAGYDA 374 Query: 380 EVEHYNALLSQALKGISDQVVTLQSVARQQKQAQESVQAAQKNVDIATRAYQRGLTDYLN 439 VE YN L ALK ISDQ++ L SV Q+ A +SV +AQK DIAT AYQRGLTDYLN Sbjct: 375 AVEQYNQTLVDALKNISDQLIRLHSVDIQKDFAAQSVASAQKTYDIATLAYQRGLTDYLN 434 Query: 440 ILHAQTQWLRQQQIVQQLQAQRLAAFAALQT 470 +L+AQT+ +QQ + +Q+QA RLAA A+L T Sbjct: 435 VLNAQTRLFQQQLVQEQVQAARLAAHASLLT 465 >RSc1294 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 489 Score = 271 bits (693), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 166/425 (39%), Positives = 242/425 (56%), Gaps = 3/425 (0%) Query: 57 WPQRAWWQAYGDAQLNQLVTRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPSAQLDVSV 116 WP + W + D QL LV A+ +P++ VA ARVR +++MA A PS LD + Sbjct: 45 WPSQNWVDQFNDPQLRALVDEAIHDSPNLQVAFARVRASRAMADAARGDLYPSVGLDAEM 104 Query: 117 GRKDWSD-NVYYGAAFRDKLTWNNTATLGLSYNVDLWDRNKNATLRAEDEMHAVAADARA 175 R+ +S +++ G + LG+SY++D W +N+ A A + A+ A+++A Sbjct: 105 TRQRFSSYDLFEGTPLGGNWVTESKIQLGVSYDLDFWGKNRAALESALSDDKAMEAESQA 164 Query: 176 AQLPPPPPXLRTYVQLALQYGLLDNTEAMLKEEQKILDLAQRRFKGGLGTQLEITQAESP 235 ++L RTYV+LA Y D E + + ++++ L+ +R + GL TQ+E TQA + Sbjct: 165 SRLMLSTSVARTYVKLAALYAQRDVAERTIAQRRELVSLSGQRLRAGLDTQVETTQARAN 224 Query: 236 LPETRRQMEALQENIALIRNQLAALLGAGPGAADGITRPTMQLQTALGLPSALPADLVGR 295 + + ++E + E IAL RNQLAALLG GP I RPT+ Q LP L DL+GR Sbjct: 225 IAAAQTELEQVDEQIALARNQLAALLGKGPDRGLAIARPTLLAQPTPKLPDHLSIDLIGR 284 Query: 296 RPDISAARWRVEAAAKGISVAKAAFYPNINLLAGIGPAAAGGGLFSFLSAPNLQTTYGPA 355 RPD+ AARWRVEA AK I VAKA F P+I+L A +G A+ + L Q GPA Sbjct: 285 RPDLVAARWRVEATAKDIDVAKAQFLPDISLTAFLGLASIAPE--NLLLGNARQLGIGPA 342 Query: 356 ISLPIFEGGRLRGQLGAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQKQAQES 415 + LPIFEGG+LR L AGYD V YN L++AL +DQ+ +L S+ Q + + Sbjct: 343 LRLPIFEGGKLRANLRGKYAGYDAAVASYNQTLTEALHDTADQITSLHSIDTQIDIQRTA 402 Query: 416 VQAAQKNVDIATRAYQRGLTDYLNILHAQTQWLRQQQIVQQLQAQRLAAFAALQTALGGG 475 + A++ +A Y GL L +L+A++ L+Q+++ LQA+RL A AL ALGGG Sbjct: 403 LAEAERAYSLARTRYGAGLGTQLTVLNAESTVLQQRRLAALLQARRLDAQMALIKALGGG 462 Query: 476 IEDEA 480 EA Sbjct: 463 YTAEA 467 >RSc1854 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 475 Score = 237 bits (604), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 159/421 (37%), Positives = 231/421 (54%), Gaps = 14/421 (3%) Query: 57 WPQRAWWQAYGDAQLNQLVTRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPSAQLDVSV 116 WP WWQAYGDAQLN L+ A+ +P MA AAAR+R A++ VA A LP + S Sbjct: 61 WPDDHWWQAYGDAQLNALIGEALRDSPDMAAAAARLRGAEAAGAVAGAALLPQVSANASA 120 Query: 117 GRKDWSDNVYYGAAFRDKLTWNNT--ATLGLSYNVDLWDRNKNATLRAEDEMHAVAADAR 174 R+ S + WN ATL S+ +D W RN+ + A ++ A ADA Sbjct: 121 ARQRQSGSS----------DWNEVGRATLDFSWEIDFWGRNRASLAAATSDLEASRADAA 170 Query: 175 AAQLPPPPPXLRTYVQLALQYGLLDNTEAMLKEEQKILDLAQRRFKGGLGTQLEITQAES 234 A+L +Y LA Y + D EA L + L RF GL T+ + QAE+ Sbjct: 171 QARLTLASAIASSYADLAGLYAVRDADEAALAVRRHSAQLFTERFASGLETRSGVKQAEA 230 Query: 235 PLPETRRQMEALQENIALIRNQLAALLGAGPGAADGITRPTMQLQTALGLPSALPADLVG 294 L ++ + E+I L R+ LAAL+GAGP I RP++ +++ GLP+ L +L+G Sbjct: 231 LLASAEGELLRVDESIGLTRHALAALVGAGPDRGLTIRRPSVAIRSPEGLPAELAVNLLG 290 Query: 295 RRPDISAARWRVEAAAKGISVAKAAFYPNINLLAGIGPAAAGGGLFSFLSAPNLQTTYGP 354 RRPD+ AAR + EA I +A FYPN+NL A IG + GL + + + + GP Sbjct: 291 RRPDVVAARLQAEAQVHRIDSKRAEFYPNVNLSAFIGFESI--GLSNLFKSGSRIGSIGP 348 Query: 355 AISLPIFEGGRLRGQLGAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQKQAQE 414 A+SLPIF GGRLRG+L A A YD V +YN L+QAL+ ++D ++ +++A + + +E Sbjct: 349 AVSLPIFNGGRLRGELKRAQASYDEAVANYNRTLTQALQDVADAWLSRKALAPRLAKVEE 408 Query: 415 SVQAAQKNVDIATRAYQRGLTDYLNILHAQTQWLRQQQIVQQLQAQRLAAFAALQTALGG 474 + +AA++ + Y+ GL YL +L AQ L Q+ + LQ++ A+ ALGG Sbjct: 409 AFRAAEQAYRVTLNRYEGGLASYLEVLTAQDTLLTNQRALTDLQSRAFTLDVAMTRALGG 468 Query: 475 G 475 G Sbjct: 469 G 469 >PA5158 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 492 Score = 233 bits (595), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 167/459 (36%), Positives = 246/459 (53%), Gaps = 4/459 (0%) Query: 23 GCADQGGIQPQAQLRDVAVLDAGQAIRQAA-SEAGWPQRAWWQAYGDAQLNQLVTRAVAG 81 GC G++P A+L+ L AG+++ A S A WP++ WW GD QL+QL+ A+ G Sbjct: 24 GCVTSEGLEPNARLQPAGALQAGRSLDGVALSPAAWPRQDWWTGLGDRQLDQLIGEALQG 83 Query: 82 NPSMAVAAARVRQAQSMAVVAHAGELPSAQLDVSVGRKDWSDNVYYGAAFRDKLTWNNTA 141 P + +A AR RQA + A A P+ S +V A + + Sbjct: 84 TPDLQIAEARARQAAATAQAQDAARQPTLDAKASYSGIRAPTSVA-PAPLGGRYSAIKYL 142 Query: 142 TLGLSYNVDLWDRNKNATLRAEDEMHAVAADARAAQLPPPPPXLRTYVQLALQYGLLDNT 201 +LG +Y+ DLW + A A + +A D++AA++ R Y LA + + D Sbjct: 143 SLGFNYDFDLWGGERAAWEAALGQANAARIDSQAARIGLSASIARAYSDLAHAFTVRDLA 202 Query: 202 EAMLKEEQKILDLAQRRFKGGLGTQLEITQAESPLPETRRQMEALQENIALIRNQLAALL 261 E LK Q++ +L+Q+R GL +++++ Q ++ L R+Q+ A +++IA R LA LL Sbjct: 203 EEELKRSQRMTELSQKRMSAGLDSKVQLQQTQTQLATARQQLSAAEQDIASARIALAVLL 262 Query: 262 GAGPGAADGITRPTMQLQTALGLPSALPADLVGRRPDISAARWRVEAAAKGISVAKAAFY 321 G GP + RP +L LPS LPA+L+GRR DI AARWRVEAA + I AK FY Sbjct: 263 GKGPDRGLELQRPQPLNPASLSLPSVLPAELLGRRADIVAARWRVEAARRNIDSAKTEFY 322 Query: 322 PNINLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAISLPIFEGGRLRGQLGAASAGYDIEV 381 PN+NL A G AA L AP+ PAISLPIF+GGR R L A YD+ V Sbjct: 323 PNLNLGAMAGLAALHTS--DVLQAPSRFFQVAPAISLPIFDGGRRRANLAERDADYDLAV 380 Query: 382 EHYNALLSQALKGISDQVVTLQSVARQQKQAQESVQAAQKNVDIATRAYQRGLTDYLNIL 441 YN L QAL +SD + L+S+ +Q +++ A+ N D+A R Y G+ YL+ L Sbjct: 381 GQYNKTLVQALGEVSDDLGKLRSLEQQVIDQRQARDIARSNFDLAMRRYGEGVGSYLDAL 440 Query: 442 HAQTQWLRQQQIVQQLQAQRLAAFAALQTALGGGIEDEA 480 Q Q L ++ + L++Q++ L ALGGG + ++ Sbjct: 441 SVQQQLLVAERQLASLESQQIDLSVQLVQALGGGFQPDS 479 >VC1409 [MU] COG1538 Outer membrane protein Vch Vibrio cholerae Length = 484 Score = 218 bits (554), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 168/471 (35%), Positives = 247/471 (52%), Gaps = 9/471 (1%) Query: 10 PALTVIALS-LTIAGCADQGGIQPQAQLRDVAVLDAGQAIRQAASEAGWPQRAWWQAYGD 68 P T LS + GC+ A + + L + A E WP WWQ Y D Sbjct: 16 PYFTASLLSAFVLTGCSVPDHYPDLATMWEANELSSTNTFSHQA-EMDWPSANWWQRYQD 74 Query: 69 AQLNQLVTRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPSAQLDVSVGRKDWSDNVYYG 128 AQLN L+ A+ +PS+ +A AR++ AQ A AG + S L ++ + + Y Sbjct: 75 AQLNHLIEEALQHSPSLEMAMARLKGAQGFA--RQAGAIRSFDLGLAASATESKVSERYQ 132 Query: 129 AAFRDKLTWNN--TATLGLSYNVDLWDRNKNATLRAEDEMHAVAADARAAQLPPPPPXLR 186 +A WN+ T TL Y+ D W +N+ A + A E+ A A++ AA+L Sbjct: 133 SATPPD-GWNDYGTLTLNFQYDFDFWGKNRAAVVAATSELAAAEAESVAARLMISTSIAN 191 Query: 187 TYVQLALQYGLLDNTEAMLKEEQKILDLAQRRFKGGLGTQLEITQAESPLPETRRQMEAL 246 Y +LA Y + A L+ K ++L ++R+ GL T ++QA++ ++ + Sbjct: 192 AYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGI 251 Query: 247 QENIALIRNQLAALLGAGPGAADGITRPTMQLQTALGLPSALPADLVGRRPDISAARWRV 306 QE+I L +N LAAL+G GP A I P + L + GLPS L+G R DI+AARWR Sbjct: 252 QESIQLQKNALAALVGQGPDRAASIEEPHITLTSRYGLPSEAGVGLLGHRADITAARWRA 311 Query: 307 EAAAKGISVAKAAFYPNINLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAISLPIFEGGRL 366 EAAA+ + +A+A FYP++ L A IG A GL + N GPAI LP+F GGRL Sbjct: 312 EAAAQQVGIAQAQFYPDVTLSAFIGYQAF--GLDHLFDSGNDAGAIGPAIYLPLFTGGRL 369 Query: 367 RGQLGAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQKQAQESVQAAQKNVDIA 426 GQL +A A Y V YN L QAL ++D V + Q++ + + +++VQ A++ + IA Sbjct: 370 EGQLTSAEARYQEAVAQYNGTLVQALYEVADVVTSSQALQARINKTEQAVQQAEQALHIA 429 Query: 427 TRAYQRGLTDYLNILHAQTQWLRQQQIVQQLQAQRLAAFAALQTALGGGIE 477 T YQ GL YL++L A+ L Q+ + LQ++ + AL ALGGG E Sbjct: 430 TNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGGFE 480