BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0339.p         (166 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1354 [H] COG0684 Demethylmenaquinone methyltransferase Rso Ra...   209   2e-54
DR0859 [H] COG0684 Demethylmenaquinone methyltransferase Dra Dei...   147   1e-35
PA1772 [H] COG0684 Demethylmenaquinone methyltransferase Pae Pse...   139   2e-33
HI0508 [H] COG0684 Demethylmenaquinone methyltransferase Hin Hae...   133   2e-31
Rv3853 [H] COG0684 Demethylmenaquinone methyltransferase Mtu Myc...   130   1e-30

>RSc1354 [H] COG0684 Demethylmenaquinone methyltransferase Rso Ralstonia
           solanacearum
          Length = 168

 Score =  209 bits (532), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/166 (64%), Positives = 126/166 (75%)

Query: 1   MTLASFATCDLCDANEDKLSAGTLHVLPPIFASFGRKQVFAGPARTLKVFEDNVQVRKAL 60
           MT       DLCDA+ED+L++G + VL P+F SFG +  FAGPA TLKVFEDN  VR  L
Sbjct: 1   MTTMMIPVTDLCDAHEDQLASGAVRVLAPVFRSFGARAAFAGPAATLKVFEDNGLVRAML 60

Query: 61  ETPGNGDVLVVDGGGSLRCALVGGNLAQLAQDNGWAGILVNGCVRDAAELNACEVGIRAL 120
           E PG G VLVVDGGGSLRCALVGGNLA+LA+DNGW G+LVNGCVRD  EL AC VG+ AL
Sbjct: 61  EQPGEGRVLVVDGGGSLRCALVGGNLAKLAEDNGWEGVLVNGCVRDTRELAACNVGVHAL 120

Query: 121 ATHPQRSFRKGAGDADIKVGIAGVAVYPGDWIYADVDGVLVSRTRL 166
           A HP++SF+K  G+ DI V + G  ++PG+WIY D DGVLVSR RL
Sbjct: 121 AAHPRKSFKKNQGERDIGVQMPGAYIHPGEWIYGDEDGVLVSRERL 166


>DR0859 [H] COG0684 Demethylmenaquinone methyltransferase Dra Deinococcus
           radiodurans
          Length = 160

 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 98/156 (62%), Gaps = 6/156 (3%)

Query: 6   FATCDLCDANEDKLSAGTLHVLPPIFASFGRKQVFAGPARTLKVFEDNVQVRKALETPGN 65
             T DL DA           V  P+   FG +  F G A TL++ E+N  VR+ L+TPG 
Sbjct: 5   IPTTDLSDAQPQA------QVAAPVLRDFGGRTRFQGAAVTLRISENNPLVRQTLQTPGA 58

Query: 66  GDVLVVDGGGSLRCALVGGNLAQLAQDNGWAGILVNGCVRDAAELNACEVGIRALATHPQ 125
           G VLVVDGGGSL CAL+GGNL     +NGW G++++GCVRD AEL   ++GIRALA HP+
Sbjct: 59  GRVLVVDGGGSLNCALLGGNLGVFGVENGWEGVIIHGCVRDTAELRELDLGIRALAAHPR 118

Query: 126 RSFRKGAGDADIKVGIAGVAVYPGDWIYADVDGVLV 161
           RS +   G+ D+ V  AGV + PGD + AD DG LV
Sbjct: 119 RSGKLEEGERDVPVTFAGVTIRPGDHVVADEDGWLV 154


>PA1772 [H] COG0684 Demethylmenaquinone methyltransferase Pae Pseudomonas
           aeruginosa
          Length = 162

 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 105/161 (65%), Gaps = 5/161 (3%)

Query: 6   FATCDLCDANEDKLSAGTLHVLPPIFASFGRKQVFAGPARTLKVFEDNVQVRKALETPGN 65
           + T DLCDA  +      + V+ P+F++FG +  F G   T+K FEDN  V++ ++  G 
Sbjct: 3   YVTPDLCDAYPE-----LVQVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGK 57

Query: 66  GDVLVVDGGGSLRCALVGGNLAQLAQDNGWAGILVNGCVRDAAELNACEVGIRALATHPQ 125
           G VLVVDGGGSLR AL+G  LA+ A  NGW GI+V GC+RD   +   ++G++ALA+HP 
Sbjct: 58  GKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPL 117

Query: 126 RSFRKGAGDADIKVGIAGVAVYPGDWIYADVDGVLVSRTRL 166
           ++ ++G GD ++ V   GV   PG+++YAD +G++VS   L
Sbjct: 118 KTDKRGIGDLNVAVTFGGVTFRPGEFVYADNNGIIVSPQAL 158


>HI0508 [H] COG0684 Demethylmenaquinone methyltransferase Hin Haemophilus
           influenzae
          Length = 162

 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 96/159 (60%), Gaps = 5/159 (3%)

Query: 8   TCDLCDANEDKLSAGTLHVLPPIFASFGRKQVFAGPARTLKVFEDNVQVRKALETPGNGD 67
           T +LCD     L A  + V+ PIF+SFG    F G   T+K FE N  + + LE  G G 
Sbjct: 5   TSELCD-----LYAEQVDVVEPIFSSFGGVSNFYGKVTTVKCFESNGLIAEVLEENGEGR 59

Query: 68  VLVVDGGGSLRCALVGGNLAQLAQDNGWAGILVNGCVRDAAELNACEVGIRALATHPQRS 127
           VLV+DGGG++R  L+   LAQLA DNGW GI+V G VR   +L   ++GI ALA  P  +
Sbjct: 60  VLVIDGGGAVRRGLIDAELAQLAVDNGWEGIIVYGAVRQIQQLENLDIGIHALAPIPVSA 119

Query: 128 FRKGAGDADIKVGIAGVAVYPGDWIYADVDGVLVSRTRL 166
               AG++DI V   GV  +P D+IYAD+ G+++S+  L
Sbjct: 120 DESSAGESDIPVNFGGVTFFPEDYIYADLTGIILSQEPL 158


>Rv3853 [H] COG0684 Demethylmenaquinone methyltransferase Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 157

 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/131 (46%), Positives = 89/131 (67%)

Query: 31  FASFGRKQVFAGPARTLKVFEDNVQVRKALETPGNGDVLVVDGGGSLRCALVGGNLAQLA 90
           F  FG +  FAGP  T++ F+DN  ++  L  P  G VLV+DG GSL  ALVG  +A+LA
Sbjct: 26  FRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVIDGAGSLHTALVGDVIAELA 85

Query: 91  QDNGWAGILVNGCVRDAAELNACEVGIRALATHPQRSFRKGAGDADIKVGIAGVAVYPGD 150
           +  GW G++V+G VRDAA L   ++GI+AL T+P++S + GAG+ D+++ + GV   PGD
Sbjct: 86  RSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITLGGVTFVPGD 145

Query: 151 WIYADVDGVLV 161
             Y+D DG++V
Sbjct: 146 IAYSDDDGIIV 156