BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0325.p         (185 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2152 [K] COG0782 Transcription elongation factor Rso Ralstoni...   261   5e-70
NMB0689 [K] COG0782 Transcription elongation factor Nme Neisseri...   214   9e-56
NMA0891 [K] COG0782 Transcription elongation factor NmA Neisseri...   214   1e-55
YPO0135 [K] COG0782 Transcription elongation factor Ype Yersinia...   148   8e-36
PM1450 [K] COG0782 Transcription elongation factor Pmu Pasteurel...   143   2e-34

>RSc2152 [K] COG0782 Transcription elongation factor Rso Ralstonia
           solanacearum
          Length = 187

 Score =  261 bits (667), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 130/184 (70%), Positives = 154/184 (83%), Gaps = 3/184 (1%)

Query: 1   MNKAFVKESDGADDDD--EIALPAIPAGSKNYMTPQGHQRIKDELLHLIDEERPEVVRVV 58
           MNKAFV+E  G ++DD  E A P +PAGSKNY+TP G+ R++ EL+HLID ERPEVV +V
Sbjct: 1   MNKAFVREDAGDEEDDLPEGAAP-LPAGSKNYITPAGYARLRTELMHLIDVERPEVVGIV 59

Query: 59  SWAASNGDRSENGDYLYGKKRLREIDRRIRFLTKRLDNAEVVDPSVHHGSDQIFFGATVT 118
           SWAASNGDRSENGDYLYGKKRLREIDRRIRFLT+R++ AEVVD S+   +DQIFFGATVT
Sbjct: 60  SWAASNGDRSENGDYLYGKKRLREIDRRIRFLTRRIERAEVVDASLQGDNDQIFFGATVT 119

Query: 119 YENQRGEEHTVTIVGIDELDPLKGLISWISPVARALTKAREGDEVVLQTPSGVEQLTILE 178
           Y NQ G+E T+TIVG+DE+D  KG +SWISP+ARAL KAREGD V L+TP+GVE + IL 
Sbjct: 120 YANQDGDETTITIVGMDEVDLDKGQVSWISPIARALIKAREGDTVALRTPTGVEPIDILA 179

Query: 179 VTYP 182
           VTYP
Sbjct: 180 VTYP 183


>NMB0689 [K] COG0782 Transcription elongation factor Nme Neisseria
           meningitidis MC58
          Length = 163

 Score =  214 bits (545), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 101/155 (65%), Positives = 122/155 (78%)

Query: 27  SKNYMTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDRR 86
           +KNY+TP G Q +KDEL  L+++ERPE+V++V+WAA NGDRSENGDYLYGK+R+REIDRR
Sbjct: 5   TKNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRR 64

Query: 87  IRFLTKRLDNAEVVDPSVHHGSDQIFFGATVTYENQRGEEHTVTIVGIDELDPLKGLISW 146
           IRFLTKRL+ A VVDP +   +DQ+FFGATV      G E TV IVGIDE+D  +  ISW
Sbjct: 65  IRFLTKRLEAAVVVDPELREATDQVFFGATVGLLRDDGREQTVKIVGIDEIDTAQNKISW 124

Query: 147 ISPVARALTKAREGDEVVLQTPSGVEQLTILEVTY 181
           ISP+AR L KAREGDEVVL TP G E++ IL V Y
Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEY 159


>NMA0891 [K] COG0782 Transcription elongation factor NmA Neisseria
           meningitidis Z2491
          Length = 163

 Score =  214 bits (544), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 101/155 (65%), Positives = 122/155 (78%)

Query: 27  SKNYMTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDRR 86
           +KNY+TP G Q +KDEL  L+++ERPE+V++V+WAA NGDRSENGDYLYGK+R+REIDRR
Sbjct: 5   TKNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRR 64

Query: 87  IRFLTKRLDNAEVVDPSVHHGSDQIFFGATVTYENQRGEEHTVTIVGIDELDPLKGLISW 146
           IRFLTKRL+ A VVDP +   +DQ+FFGATV      G E TV IVGIDE+D  +  ISW
Sbjct: 65  IRFLTKRLEAAVVVDPELREATDQVFFGATVGLLRGDGREQTVKIVGIDEIDTAQNKISW 124

Query: 147 ISPVARALTKAREGDEVVLQTPSGVEQLTILEVTY 181
           ISP+AR L KAREGDEVVL TP G E++ IL V Y
Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEY 159


>YPO0135 [K] COG0782 Transcription elongation factor Ype Yersinia pestis
          Length = 171

 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 80/156 (51%), Positives = 102/156 (65%), Gaps = 1/156 (0%)

Query: 26  GSKNYMTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDR 85
              NY+T +G Q +  EL +L  EERP V + VS AA+ GDRSEN +Y+YGKKRLREIDR
Sbjct: 2   AKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDR 61

Query: 86  RIRFLTKRLDNAEVVDPSVHHGSDQIFFGATVTYENQRGEEHTVTIVGIDELDPLKGLIS 145
           R+RFL KRL+  ++VDP       ++FFGA V  EN++ E+    +VG DE DP K  IS
Sbjct: 62  RVRFLAKRLEVLKIVDPDPRQEG-KVFFGAWVRVENEQEEQRIFRLVGPDEFDPAKKWIS 120

Query: 146 WISPVARALTKAREGDEVVLQTPSGVEQLTILEVTY 181
             SPVARAL   +  DEV +QTP+G     ILE+ Y
Sbjct: 121 IDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156


>PM1450 [K] COG0782 Transcription elongation factor Pmu Pasteurella
           multocida
          Length = 158

 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/155 (50%), Positives = 102/155 (65%), Gaps = 5/155 (3%)

Query: 29  NYMTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDRRIR 88
           NY+T  G   +  EL  L  +ERP+V + VS AA+ GDRSEN +Y+YGK+RLREIDRR+R
Sbjct: 5   NYITRSGWNALDQELKFLWKDERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVR 64

Query: 89  FLTKRLDNAEVVDPSVHHGSDQ--IFFGATVTYENQRGEEHTVTIVGIDELDPLKGLISW 146
           FLTKRL+  ++VD   +H   +  +FFGA V  EN+ GEE    IVG DE DP K  IS 
Sbjct: 65  FLTKRLEVLQIVD---YHPKQEGKVFFGAWVALENEAGEEKHYRIVGCDEFDPAKNWISI 121

Query: 147 ISPVARALTKAREGDEVVLQTPSGVEQLTILEVTY 181
            SPVARAL      DE+ ++TPSG+  L I ++ Y
Sbjct: 122 DSPVARALIGKSIDDEIKVETPSGLVILYINQIWY 156