BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0314.p (242 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2159 [J] COG0689 RNase PH Rso Ralstonia solanacearum 346 3e-95 PA5334 [J] COG0689 RNase PH Pae Pseudomonas aeruginosa 340 2e-93 XF1505 [J] COG0689 RNase PH Xfa Xylella fastidiosa 9a5c 315 8e-86 HI0273 [J] COG0689 RNase PH Hin Haemophilus influenzae 312 5e-85 STM3734 [J] COG0689 RNase PH Sty Salmonella typhimurium LT2 307 1e-83 >RSc2159 [J] COG0689 RNase PH Rso Ralstonia solanacearum Length = 238 Score = 346 bits (888), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 169/237 (71%), Positives = 191/237 (80%) Query: 6 RPSGRSVSQLRDVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65 RPSGR QLR V LTR YT+HAEGSVLV FGDT VLCTAS+ KVP KG G+GW+TA Sbjct: 2 RPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVTA 61 Query: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125 EYGMLPRSTHTR DREAA+GKQSGRTQEIQRLIGRA+R+ FDL A GE T+ LDCDVLQA Sbjct: 62 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDCDVLQA 121 Query: 126 DGGTRTAAITGAMVAAYDAFNVLKSRGLIETIPVKQFVAAISVGVYQGVPVLDLDYLEDS 185 DGGTRTA+ITGA VAA+DA +V++ +G + P++ FVAA+SVGV GVPVLDLDY ED+ Sbjct: 122 DGGTRTASITGAFVAAHDAISVMRKKGQLTGEPIRDFVAAVSVGVVDGVPVLDLDYPEDA 181 Query: 186 DCDTDMNVVMTDGGHFVEVQGTAEGAAFDRATLNNLLDLAQQGIATLNGLQKQALGL 242 CDTDMN+VMT G FVEVQGTAEG F R ++ LL LA GI TL GLQKQALGL Sbjct: 182 SCDTDMNIVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADHGIRTLIGLQKQALGL 238 >PA5334 [J] COG0689 RNase PH Pae Pseudomonas aeruginosa Length = 239 Score = 340 bits (871), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 166/236 (70%), Positives = 191/236 (80%) Query: 5 HRPSGRSVSQLRDVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLT 64 +RPSGR+ QLR +R+TR YTKHAEGSVLVEFGDT+V+CT S E VP FLKG+GQGWLT Sbjct: 2 NRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLT 61 Query: 65 AEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQ 124 AEYGMLPRST R REA++GKQ GRT EIQRLIGR+LRAA DL GE TL +DCDV+Q Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQ 121 Query: 125 ADGGTRTAAITGAMVAAYDAFNVLKSRGLIETIPVKQFVAAISVGVYQGVPVLDLDYLED 184 ADGGTRTA+ITGA VA DA VLK RG ++ P+KQ VAA+SVG+YQGVPVLDLDYLED Sbjct: 122 ADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLED 181 Query: 185 SDCDTDMNVVMTDGGHFVEVQGTAEGAAFDRATLNNLLDLAQQGIATLNGLQKQAL 240 S +TD+NVVMTD G F+EVQGTAEGA F A LN +L+LAQQG+ L LQ+ AL Sbjct: 182 SAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAAL 237 >XF1505 [J] COG0689 RNase PH Xfa Xylella fastidiosa 9a5c Length = 241 Score = 315 bits (806), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 156/235 (66%), Positives = 184/235 (78%) Query: 6 RPSGRSVSQLRDVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65 RPSGR LR VR+ R +T HAEGSVLV FG+T V+CTAS+E KVP FL+ KG+GW+TA Sbjct: 5 RPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASVEAKVPVFLRNKGEGWVTA 64 Query: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125 EYGMLPRSTHTR +REAA+GKQ+GRT EIQRLIGRALR D A GERT+ LDCDVLQA Sbjct: 65 EYGMLPRSTHTRSEREAARGKQAGRTLEIQRLIGRALRTCVDRTALGERTITLDCDVLQA 124 Query: 126 DGGTRTAAITGAMVAAYDAFNVLKSRGLIETIPVKQFVAAISVGVYQGVPVLDLDYLEDS 185 DGGTRTAAITGA VA DA L+ RG ++ P+ VAA+SVG+Y+G+PVLDLDY EDS Sbjct: 125 DGGTRTAAITGAYVALVDAVRCLEQRGQLKKSPLIGAVAAVSVGIYRGMPVLDLDYPEDS 184 Query: 186 DCDTDMNVVMTDGGHFVEVQGTAEGAAFDRATLNNLLDLAQQGIATLNGLQKQAL 240 DCDTDMNVVM D G +E+QGTAE AF R L+ LL LA++G A L +Q++AL Sbjct: 185 DCDTDMNVVMNDEGGVIELQGTAEQQAFRRGELDMLLALAERGTAMLFDIQREAL 239 >HI0273 [J] COG0689 RNase PH Hin Haemophilus influenzae Length = 238 Score = 312 bits (799), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 152/237 (64%), Positives = 183/237 (77%) Query: 6 RPSGRSVSQLRDVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65 RP+ R +Q R +++TR YTKHAEGSVLVEFGDT+VLCTA++E+ VP FLKG+GQGW+TA Sbjct: 2 RPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVTA 61 Query: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125 EYGMLPRSTH+RM REAAKGKQ GRT EIQRLI R+LRA DL+A GER + LDCDV+QA Sbjct: 62 EYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQA 121 Query: 126 DGGTRTAAITGAMVAAYDAFNVLKSRGLIETIPVKQFVAAISVGVYQGVPVLDLDYLEDS 185 DGGTRTA+ITGA VA DA N L G ++T P+K V+AISVG+ G V DL+Y+EDS Sbjct: 122 DGGTRTASITGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYVEDS 181 Query: 186 DCDTDMNVVMTDGGHFVEVQGTAEGAAFDRATLNNLLDLAQQGIATLNGLQKQALGL 242 +TDMNVVM + G +EVQGTAEG F L LLDLA+QG + Q++ALGL Sbjct: 182 AAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREALGL 238 >STM3734 [J] COG0689 RNase PH Sty Salmonella typhimurium LT2 Length = 238 Score = 307 bits (787), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 157/235 (66%), Positives = 183/235 (77%) Query: 6 RPSGRSVSQLRDVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65 RP+GRS +Q+R V LTR YTKHAEGSVLVEFGDT+VLCTASIEE VP FLKG+GQGW+TA Sbjct: 2 RPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 Query: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125 EYGMLPR+THTR REAAKGKQ GRT EIQRLI RALRAA DL+ GE T+ LDCDV+QA Sbjct: 62 EYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQA 121 Query: 126 DGGTRTAAITGAMVAAYDAFNVLKSRGLIETIPVKQFVAAISVGVYQGVPVLDLDYLEDS 185 DGGTRTA+ITGA VA DA N L + G ++T P+K VAA+SVG+ G + DL+Y+EDS Sbjct: 122 DGGTRTASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDS 181 Query: 186 DCDTDMNVVMTDGGHFVEVQGTAEGAAFDRATLNNLLDLAQQGIATLNGLQKQAL 240 +TDMNVVMT+ G +EVQGTAEG F L LL LA+ GI ++ QK AL Sbjct: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAAL 236