BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0275.p         (178 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1399 [J] COG0242 N-formylmethionyl-tRNA deformylase Rso Ralst...   270   1e-72
PA1122 [J] COG0242 N-formylmethionyl-tRNA deformylase Pae Pseudo...   177   2e-44
all2007 [J] COG0242 N-formylmethionyl-tRNA deformylase Nos Nosto...   127   1e-29
Cgl1563 [J] COG0242 N-formylmethionyl-tRNA deformylase Cgl Coryn...   112   4e-25
CT353 [J] COG0242 N-formylmethionyl-tRNA deformylase Ctr Chlamyd...   111   1e-24

>RSc1399 [J] COG0242 N-formylmethionyl-tRNA deformylase Rso Ralstonia
           solanacearum
          Length = 177

 Score =  270 bits (691), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 127/176 (72%), Positives = 149/176 (84%)

Query: 3   IREILKMGDPRLLRQAQPVTQFGTPELAQLVDDMFETMRAVNGAGLAAPQIGVDLQLVIF 62
           IR ILKMGD RLLR A+PV +F TPEL  L++DMF+TM A  GAGLAAPQIGVDLQ+VIF
Sbjct: 2   IRPILKMGDSRLLRVAKPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIF 61

Query: 63  GFGHNQRYPEAPAVPETVLINPVLTPLSDEEEEGWEGCLSVPGMRGVVPRWSRLRYQGLD 122
           GF  N RYP+APAVP+TVLINP + PLSD  E+GWEGCLSVPG+RGVVPR++RLRY G D
Sbjct: 62  GFDRNDRYPDAPAVPKTVLINPTIEPLSDAMEDGWEGCLSVPGLRGVVPRYTRLRYTGYD 121

Query: 123 LHGNEIDRTVDGFHARVVQHECDHLQGILYPMRIRDFRQFGFTEVLFPDLDPNQDD 178
            HG+ IDR  +GFHARVVQHECDHLQGILYPMR++DF +FGFTE+LFP+L  + +D
Sbjct: 122 QHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVQDFTRFGFTEILFPELPAHHND 177


>PA1122 [J] COG0242 N-formylmethionyl-tRNA deformylase Pae Pseudomonas
           aeruginosa
          Length = 147

 Score =  177 bits (448), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/122 (72%), Positives = 100/122 (81%), Gaps = 2/122 (1%)

Query: 3   IREILKMGDPRLLRQAQPVTQ--FGTPELAQLVDDMFETMRAVNGAGLAAPQIGVDLQLV 60
           IREILKMGD RLLR AQPV    FG+ EL +L+DDMFETM  V G GLAAPQIGVDLQLV
Sbjct: 2   IREILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLV 61

Query: 61  IFGFGHNQRYPEAPAVPETVLINPVLTPLSDEEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120
           IFGF  ++RYP+APAVP T+L+NP +TPL DE EEGWEGCLSVPG+RG V R  R+RYQG
Sbjct: 62  IFGFERSERYPDAPAVPPTILLNPRVTPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQG 121

Query: 121 LD 122
           LD
Sbjct: 122 LD 123


>all2007 [J] COG0242 N-formylmethionyl-tRNA deformylase Nos Nostoc sp. PCC
           7120
          Length = 179

 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 91/153 (59%)

Query: 6   ILKMGDPRLLRQAQPVTQFGTPELAQLVDDMFETMRAVNGAGLAAPQIGVDLQLVIFGFG 65
           I+++G+P L ++A  V       + QL+DD+  T+   NG G+A+PQ+    +L I    
Sbjct: 8   IIQLGNPTLRQKAAWVENIHDATIQQLIDDLIATVAKANGVGIASPQVAQSYRLFIVASR 67

Query: 66  HNQRYPEAPAVPETVLINPVLTPLSDEEEEGWEGCLSVPGMRGVVPRWSRLRYQGLDLHG 125
            N RYP AP +  T +INP +   S E  EGWEGCLSVPG+RG+VPR   +  +  D +G
Sbjct: 68  PNPRYPHAPEMEPTAMINPKIVGHSTEIVEGWEGCLSVPGIRGLVPRHQAIEVEYTDRYG 127

Query: 126 NEIDRTVDGFHARVVQHECDHLQGILYPMRIRD 158
           N   +T+  F AR+ QHE DHL G+L+  R+  
Sbjct: 128 NLQKQTLTDFVARIFQHEFDHLDGVLFIDRVES 160


>Cgl1563 [J] COG0242 N-formylmethionyl-tRNA deformylase Cgl Corynebacterium
           glutamicum
          Length = 169

 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 87/156 (55%), Gaps = 7/156 (4%)

Query: 1   MAIREILKMGDPRLLRQAQPVTQFGTPELAQLVDDMFETMRAVNGAGLAAPQIGVDLQLV 60
           MA+RE+   GDP L+ +A  V  F    L+ L+DDMF+TM    G GLAA Q+GV  ++ 
Sbjct: 1   MAVREVRLFGDPVLVSRADEVVDF-DESLSTLIDDMFDTMEDAGGVGLAANQVGVLRRVF 59

Query: 61  IFGFGHNQRYPEAPAVPETVLINPVLTPLSDEEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120
           +F   H +            +INPV  PL+++ + G EGCLS+P +     R+  +R  G
Sbjct: 60  VFDTSHQEGGLRGH------VINPVWEPLTEDTQTGKEGCLSIPDVSAETTRYETVRLSG 113

Query: 121 LDLHGNEIDRTVDGFHARVVQHECDHLQGILYPMRI 156
            D  GN +    +G  AR +QHE DHL G+L+  R+
Sbjct: 114 QDRDGNPVGFVANGLLARCIQHETDHLDGVLFLKRL 149


>CT353 [J] COG0242 N-formylmethionyl-tRNA deformylase Ctr Chlamydia
           trachomatis
          Length = 181

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 87/157 (55%), Gaps = 2/157 (1%)

Query: 3   IREILKMGDPRLLRQAQPVTQFGTPELAQLVDDMFETMRAVNGAGLAAPQIGVDLQLVIF 62
           IR++     P L + A PVT+  T EL QLV DM ETM    G GLAAPQ+G  + L I 
Sbjct: 2   IRDLEYYDSPILRKVAAPVTEI-TDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIM 60

Query: 63  GFGHNQRYPEAPAVP-ETVLINPVLTPLSDEEEEGWEGCLSVPGMRGVVPRWSRLRYQGL 121
           G        E        V INPV+T  S++   G EGCLS+PG+RG V R  ++     
Sbjct: 61  GVERELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAK 120

Query: 122 DLHGNEIDRTVDGFHARVVQHECDHLQGILYPMRIRD 158
           +L G +    ++GF AR+V HE DHL G+LY  R+ D
Sbjct: 121 NLDGQQFSLALEGFLARIVMHETDHLHGVLYIDRMSD 157