BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0266.p (305 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1405 [J] COG0264 Translation elongation factor Ts Rso Ralston... 409 e-114 NMB2102 [J] COG0264 Translation elongation factor Ts Nme Neisser... 249 4e-66 NMA0327 [J] COG0264 Translation elongation factor Ts NmA Neisser... 249 4e-66 lin1766 [J] COG0264 Translation elongation factor Ts Lin Listeri... 214 3e-55 BS_tsf [J] COG0264 Translation elongation factor Ts Bsu Bacillus... 213 3e-55 >RSc1405 [J] COG0264 Translation elongation factor Ts Rso Ralstonia solanacearum Length = 294 Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust. Identities = 205/274 (74%), Positives = 239/274 (87%), Gaps = 3/274 (1%) Query: 1 MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60 MAAITA+MV +LRAKTDAPMMECKKALTEA+G+M KAEEILRVKLG+KA KA++RITAEG Sbjct: 3 MAAITASMVAELRAKTDAPMMECKKALTEAEGNMEKAEEILRVKLGNKAGKAAARITAEG 62 Query: 61 VISAYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLADGK 120 VI+++I G +GALVE+NCETDFV++ND+F+G AKL+ QNPADVAAL A + D + Sbjct: 63 VIASFIDGTIGALVELNCETDFVSRNDDFLGFANEIAKLIATQNPADVAALSALSIGD-E 121 Query: 121 TLEEVRTELIGRIGENMSFRRFQRFETTGKLASYLHGTRIGVIVEFDGAEEQVGKDVAMH 180 T+E VRT LIG+IGENM+ RRFQRFE T KLASYLHGTRIGV+V FDG +E KDVAMH Sbjct: 122 TVEAVRTRLIGKIGENMTIRRFQRFEGT-KLASYLHGTRIGVMVAFDG-DEVAAKDVAMH 179 Query: 181 IAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKYLKEVSLFNQ 240 AAMKPVALS+++VPA+LI KERS+A KAAESGKPA+IVAKMV+GSVQKYLKEVSL NQ Sbjct: 180 AAAMKPVALSSDEVPAELIAKERSIAEQKAAESGKPAEIVAKMVEGSVQKYLKEVSLLNQ 239 Query: 241 AFVKNDKQSVEQMLKAANTTVKSFAMYVVGEGIE 274 FVKNDKQ+VEQMLKAANTTVK F ++VVGEGIE Sbjct: 240 PFVKNDKQTVEQMLKAANTTVKGFTLFVVGEGIE 273 >NMB2102 [J] COG0264 Translation elongation factor Ts Nme Neisseria meningitidis MC58 Length = 284 Score = 249 bits (637), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 139/276 (50%), Positives = 178/276 (64%), Gaps = 10/276 (3%) Query: 1 MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60 MA ITA MV DLRA T MMECKKAL EA+G+ KAEEILR+K G+KA K + R AEG Sbjct: 1 MAEITAKMVADLRAATGLGMMECKKALVEAEGNFDKAEEILRIKSGAKAGKLAGRTAAEG 60 Query: 61 VISAYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLADGK 120 V++ I GNVGALVEVNCETDFV K+ F+ AK E+ PA V L + Sbjct: 61 VLAYAINGNVGALVEVNCETDFVAKDAGFVEFANFVAKTAAEKKPASVEEL-------SE 113 Query: 121 TLEEVRTELIGRIGENMSFRRFQRFETTGKLASYLHGTRI--GVIVEFDGAEEQVGKDVA 178 +E R +I ++GENMS RRFQ +T +L +Y+HG GV+VE+ G+E+ V + + Sbjct: 114 LVEAERKAIIAKLGENMSVRRFQVIDTANQLVAYIHGALATEGVLVEYKGSED-VARKIG 172 Query: 179 MHIAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKYLKEVSLF 238 MHI A KP +S +V A+ +EKER + +A SGKPADI AKMV+G ++K+L E++L Sbjct: 173 MHIVAAKPQCVSEAEVDAETVEKERHIYTEQAIASGKPADIAAKMVEGRIRKFLAEITLN 232 Query: 239 NQAFVKNDKQSVEQMLKAANTTVKSFAMYVVGEGIE 274 QAFV N Q+V Q K T V SF Y VG+GIE Sbjct: 233 GQAFVMNPDQTVAQFSKENGTEVISFVRYKVGDGIE 268 >NMA0327 [J] COG0264 Translation elongation factor Ts NmA Neisseria meningitidis Z2491 Length = 284 Score = 249 bits (637), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 139/276 (50%), Positives = 178/276 (64%), Gaps = 10/276 (3%) Query: 1 MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60 MA ITA MV DLRA T MMECKKAL EA+G+ KAEEILR+K G+KA K + R AEG Sbjct: 1 MAEITAKMVADLRAATGLGMMECKKALVEAEGNFDKAEEILRIKSGAKAGKLAGRTAAEG 60 Query: 61 VISAYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLADGK 120 V++ I GNVGALVEVNCETDFV K+ F+ AK E+ PA V L + Sbjct: 61 VLAYAINGNVGALVEVNCETDFVAKDAGFVEFANFVAKTAAEKKPASVEEL-------SE 113 Query: 121 TLEEVRTELIGRIGENMSFRRFQRFETTGKLASYLHGTRI--GVIVEFDGAEEQVGKDVA 178 +E R +I ++GENMS RRFQ +T +L +Y+HG GV+VE+ G+E+ V + + Sbjct: 114 LVEAERKAIIAKLGENMSVRRFQVIDTANQLVAYIHGALATEGVLVEYKGSED-VARKIG 172 Query: 179 MHIAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKYLKEVSLF 238 MHI A KP +S +V A+ +EKER + +A SGKPADI AKMV+G ++K+L E++L Sbjct: 173 MHIVAAKPQCVSEAEVDAETVEKERHIYTEQAIASGKPADIAAKMVEGRIRKFLAEITLN 232 Query: 239 NQAFVKNDKQSVEQMLKAANTTVKSFAMYVVGEGIE 274 QAFV N Q+V Q K T V SF Y VG+GIE Sbjct: 233 GQAFVMNPDQTVAQFSKENGTEVISFVRYKVGDGIE 268 >lin1766 [J] COG0264 Translation elongation factor Ts Lin Listeria innocua Length = 294 Score = 214 bits (544), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 126/278 (45%), Positives = 172/278 (61%), Gaps = 4/278 (1%) Query: 1 MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60 MA ITA MV +LR KT A MM+CKKAL E +GDM KA + LR K +KA+K S R+ +EG Sbjct: 1 MANITAQMVKELREKTGAGMMDCKKALVETEGDMEKAIDYLREKGIAKAAKKSDRVASEG 60 Query: 61 VISAYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLADGK 120 + ++EVN ETDFV KND F LV+A AK ++E P + ++ +G+ Sbjct: 61 MTHVISNEKHAVVLEVNAETDFVAKNDNFQQLVDALAKQILEVRPDSLEDALKTEMPNGQ 120 Query: 121 TLEEVRTELIGRIGENMSFRRFQRFETTGKLA--SYLH-GTRIGVIVEFDG-AEEQVGKD 176 T+++ TE I +IGEN+S RRF+ E A Y+H RIGV+ +G + V KD Sbjct: 121 TVQDYITEAITKIGENISLRRFEVKEKADNSAFGEYIHMNGRIGVLTLLEGTTDTTVAKD 180 Query: 177 VAMHIAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKYLKEVS 236 VAMHIAA+ P +S E V + +E E+ V +A GKPA+IV KMV+G ++KYL E+S Sbjct: 181 VAMHIAAINPKYISREDVSTEEVEHEKEVLTQQALNEGKPANIVEKMVEGRLKKYLSEIS 240 Query: 237 LFNQAFVKNDKQSVEQMLKAANTTVKSFAMYVVGEGIE 274 L +Q FVKN +V + +K + V SF + VGEGIE Sbjct: 241 LEDQPFVKNPDITVGEYVKQSGGKVVSFVRFEVGEGIE 278 >BS_tsf [J] COG0264 Translation elongation factor Ts Bsu Bacillus subtilis Length = 293 Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 125/276 (45%), Positives = 174/276 (63%), Gaps = 4/276 (1%) Query: 3 AITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEGVI 62 AITA V +LR KT A MM+CKKALTE DGDM KA ++LR K +KA+K + RI AEG Sbjct: 2 AITAQQVKELREKTGAGMMDCKKALTETDGDMDKAIDLLREKGIAKAAKKADRIAAEGST 61 Query: 63 SAYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLADGKTL 122 GN G ++EVN ETDFV KN+ F L+ A ++ PADV K+ +G T+ Sbjct: 62 LIKTDGNKGVILEVNSETDFVAKNEGFKELLNTLADHLLANTPADVEEAMGQKMENGSTV 121 Query: 123 EEVRTELIGRIGENMSFRRFQRF--ETTGKLASYLH-GTRIGVIVEFDG-AEEQVGKDVA 178 EE T + +IGE ++ RRF + + +YLH G RIGV+ +G +E+ KD+A Sbjct: 122 EEYITSAVAKIGEKITLRRFTVLTKDDSSAFGAYLHMGGRIGVLTVLNGTTDEETAKDIA 181 Query: 179 MHIAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKYLKEVSLF 238 MH+AA+ P +S +QV + ER + +A + GKP +IVAKMV+G + K+ +E+ L Sbjct: 182 MHVAAVNPRYISRDQVSEEETNHERQILTQQALQEGKPENIVAKMVEGRLNKFFEEICLL 241 Query: 239 NQAFVKNDKQSVEQMLKAANTTVKSFAMYVVGEGIE 274 +QAFVKN + V+Q++ A N TV++F Y VGEGIE Sbjct: 242 DQAFVKNPDEKVKQVIAAKNATVQTFVRYEVGEGIE 277