BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0263.p (229 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1408 [I] COG0020 Undecaprenyl pyrophosphate synthase Rso Rals... 321 9e-88 NMA0081 [I] COG0020 Undecaprenyl pyrophosphate synthase NmA Neis... 291 9e-79 NMB0186 [I] COG0020 Undecaprenyl pyrophosphate synthase Nme Neis... 290 2e-78 PA3652 [I] COG0020 Undecaprenyl pyrophosphate synthase Pae Pseud... 284 1e-76 VC2256 [I] COG0020 Undecaprenyl pyrophosphate synthase Vch Vibri... 246 3e-65 >RSc1408 [I] COG0020 Undecaprenyl pyrophosphate synthase Rso Ralstonia solanacearum Length = 258 Score = 321 bits (822), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 147/224 (65%), Positives = 184/224 (82%), Gaps = 2/224 (0%) Query: 1 MDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERGIEFLTLFAFSSENWRRPADEVSV 60 MDGNGRWAT+R LPR+AGH++G+DAVR+ V+A RG+ +LTLFAFSSENWRRPA+E+S Sbjct: 23 MDGNGRWATERHLPRMAGHSRGLDAVRAAVQAADHRGVRYLTLFAFSSENWRRPAEEISF 82 Query: 61 LMRLFMTVLEREVGKMANNGIRLRIVGDMSRFDPKLQEMAAKAEAQTAGNSRLTLTVCAN 120 LM+LFMT L REV K+ ++GIRLR+VGD+S F P++Q M +AEA+TA N LT+T+ AN Sbjct: 83 LMKLFMTALRREVSKLNDSGIRLRVVGDLSAFSPRIQLMIREAEAKTATNPGLTVTIAAN 142 Query: 121 YGGRWDVMQAVSKMVKDKP--GATDYTEEELAPYLAMAYAPEPDLFIRTGGEQRISNFLL 178 YGGRWD++QA+ +V D+P TEE L+PY+A+AYA EPDLFIRTGGEQRISNF+L Sbjct: 143 YGGRWDILQAMRALVADQPDIAPEAITEEALSPYMALAYASEPDLFIRTGGEQRISNFML 202 Query: 179 WQLAYSELYFTETFWPDFDDKALDQAIGSYQQRERRFGRTSAQV 222 WQLAYSELYFTE +WPDFD +D+A Y+ RERRFGRTSAQ+ Sbjct: 203 WQLAYSELYFTERYWPDFDAAEMDRAFAWYRNRERRFGRTSAQL 246 >NMA0081 [I] COG0020 Undecaprenyl pyrophosphate synthase NmA Neisseria meningitidis Z2491 Length = 248 Score = 291 bits (744), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 129/222 (58%), Positives = 177/222 (79%), Gaps = 2/222 (0%) Query: 1 MDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERGIEFLTLFAFSSENWRRPADEVSV 60 MDGNGRWA KRFLPR+ GH +G+DA+ ++V+ CA+ G+++LT+FAFS+ENWRRP DEVS Sbjct: 22 MDGNGRWAKKRFLPRIMGHKRGLDALENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSF 81 Query: 61 LMRLFMTVLEREVGKMANNGIRLRIVGDMSRFDPKLQEMAAKAEAQTAGNSRLTLTVCAN 120 LM LF+ L+++V ++ N +RL+I+G RF+ ++ + +AEA TA N+ LTL++ A+ Sbjct: 82 LMGLFLQALQKQVRRLHENNMRLKILGSRERFNRQILKGIEEAEALTANNTGLTLSIAAD 141 Query: 121 YGGRWDVMQAVSKMVKDKPGATDYTEEELAPYLAMAYAPEPDLFIRTGGEQRISNFLLWQ 180 YGGRWD++QA +K++ + G ++ TE+ LA YL + APEPDLFIRTGGE RISNFLLWQ Sbjct: 142 YGGRWDILQAANKLIAE--GVSEITEDTLAKYLMLGDAPEPDLFIRTGGETRISNFLLWQ 199 Query: 181 LAYSELYFTETFWPDFDDKALDQAIGSYQQRERRFGRTSAQV 222 +AY+ELYFT+ WPDFD KALD A+ S+Q+RERRFGRTS Q+ Sbjct: 200 MAYAELYFTDILWPDFDGKALDDAVASFQKRERRFGRTSEQL 241 >NMB0186 [I] COG0020 Undecaprenyl pyrophosphate synthase Nme Neisseria meningitidis MC58 Length = 248 Score = 290 bits (742), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 128/222 (57%), Positives = 177/222 (79%), Gaps = 2/222 (0%) Query: 1 MDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERGIEFLTLFAFSSENWRRPADEVSV 60 MDGNGRWA KRFLPR+ GH +G+DA+ ++V+ CA+ G+++LT+FAFS+ENWRRP DEVS Sbjct: 22 MDGNGRWAKKRFLPRIMGHKRGLDALENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSF 81 Query: 61 LMRLFMTVLEREVGKMANNGIRLRIVGDMSRFDPKLQEMAAKAEAQTAGNSRLTLTVCAN 120 LM LF+ L+++V ++ N +RL+I+G RF+ ++ + +AEA TA N+ LTL++ A+ Sbjct: 82 LMGLFLQALQKQVRRLHENNMRLKILGSRERFNRQILQGIEEAEALTANNTGLTLSIAAD 141 Query: 121 YGGRWDVMQAVSKMVKDKPGATDYTEEELAPYLAMAYAPEPDLFIRTGGEQRISNFLLWQ 180 YGGRWD++QA +K++ + G ++ TE+ LA +L + APEPDLFIRTGGE RISNFLLWQ Sbjct: 142 YGGRWDILQAANKLIAE--GVSEITEDTLAKHLMLGDAPEPDLFIRTGGETRISNFLLWQ 199 Query: 181 LAYSELYFTETFWPDFDDKALDQAIGSYQQRERRFGRTSAQV 222 +AY+ELYFT+ WPDFD KALD A+ S+Q+RERRFGRTS Q+ Sbjct: 200 MAYAELYFTDILWPDFDGKALDDAVASFQKRERRFGRTSEQL 241 >PA3652 [I] COG0020 Undecaprenyl pyrophosphate synthase Pae Pseudomonas aeruginosa Length = 251 Score = 284 bits (726), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 136/233 (58%), Positives = 167/233 (71%), Gaps = 4/233 (1%) Query: 1 MDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERGIEFLTLFAFSSENWRRPADEVSV 60 MDGN RWA KR LP VAGH GVDAVR+++E CAE G+E LTLFAFSSENW+RPADEVS Sbjct: 18 MDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQRPADEVSA 77 Query: 61 LMRLFMTVLEREVGKMANNGIRLRIVGDMSRFDPKLQEMAAKAEAQTAGNSRLTLTVCAN 120 LM LF+ L REV K+ NGIRLRI+GD +RF P+LQ +AEA TAGN+R L V AN Sbjct: 78 LMELFLVALRREVRKLDENGIRLRIIGDRTRFHPELQAAMREAEAATAGNTRFLLQVAAN 137 Query: 121 YGGRWDVMQAVSKMVKDKPG----ATDYTEEELAPYLAMAYAPEPDLFIRTGGEQRISNF 176 YGG+WD++QA ++ ++ G A D + E L L P PDL IRTGGE RISNF Sbjct: 138 YGGQWDIVQAAQRLAREVQGGHLAADDISAELLQGCLVTGDQPLPDLCIRTGGEHRISNF 197 Query: 177 LLWQLAYSELYFTETFWPDFDDKALDQAIGSYQQRERRFGRTSAQVLDQKKAS 229 LLWQLAY+ELYF++ FWPDF A+ A+ + +R+RRFG+TS QV + + S Sbjct: 198 LLWQLAYAELYFSDLFWPDFKHAAMRAALADFSKRQRRFGKTSEQVEAEARPS 250 >VC2256 [I] COG0020 Undecaprenyl pyrophosphate synthase Vch Vibrio cholerae Length = 256 Score = 246 bits (628), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 118/226 (52%), Positives = 152/226 (67%), Gaps = 4/226 (1%) Query: 1 MDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERGIEFLTLFAFSSENWRRPADEVSV 60 MDGNGRWA + PRV GH GV AVR + A GI+ +TLFAFSSENWRRP +EV V Sbjct: 25 MDGNGRWAKAQGKPRVFGHKNGVAAVRKTISTSARLGIKAVTLFAFSSENWRRPEEEVGV 84 Query: 61 LMRLFMTVLEREVGKMANNGIRLRIVGDMSRFDPKLQEMAAKAEAQTAGNSRLTLTVCAN 120 LM LFMTVL E+ K+ N +RLR++GD SRF +LQ A+AE TA N+ + + + AN Sbjct: 85 LMELFMTVLSTEIKKLHKNNLRLRVIGDKSRFSERLQTKIAQAEQLTASNTGMVVNIAAN 144 Query: 121 YGGRWDVMQAVS----KMVKDKPGATDYTEEELAPYLAMAYAPEPDLFIRTGGEQRISNF 176 YGG+WD++QA K+ + + +D E+ +L MA P+ DL IRT GE RISNF Sbjct: 145 YGGQWDILQATQALAEKVTQGELQPSDIDEDVFKQHLTMADLPDVDLLIRTSGECRISNF 204 Query: 177 LLWQLAYSELYFTETFWPDFDDKALDQAIGSYQQRERRFGRTSAQV 222 +LWQLAY+E+YFT FWP+FD+ L +A+ + RERRFG T QV Sbjct: 205 MLWQLAYAEMYFTPVFWPEFDENCLIEAVTWFVNRERRFGCTGEQV 250