BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0241.p (229 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1455 [TK] COG0745 Response regulators consisting of a CheY-li... 273 3e-73 NMB0595 [TK] COG0745 Response regulators consisting of a CheY-li... 256 2e-68 NMA0798 [TK] COG0745 Response regulators consisting of a CheY-li... 256 2e-68 YPO2998 [TK] COG0745 Response regulators consisting of a CheY-li... 239 3e-63 VC2692 [TK] COG0745 Response regulators consisting of a CheY-lik... 199 4e-51 >RSp1455 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 246 Score = 273 bits (697), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 138/229 (60%), Positives = 169/229 (73%), Gaps = 1/229 (0%) Query: 1 MSKVLLIDDDVELVEMLKEYLEQEKFEVNVAHDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 M++VLL+DDD EL ML +YL E F VAHDGEAG A AL+G +AI VLDVMMPRL+G Sbjct: 19 MTRVLLVDDDAELTGMLVQYLAHEGFAAEVAHDGEAGVARALSGDFAIVVLDVMMPRLSG 78 Query: 61 VDTLRRIRAKSNMPVVMLTAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILRRAS 120 +D LRRIRA S +PVVMLTA+GD+ DRI GL+LGADDYVPKPCTP E+ AR+RAILRR S Sbjct: 79 IDALRRIRAASQVPVVMLTARGDNIDRISGLDLGADDYVPKPCTPGELVARLRAILRRTS 138 Query: 121 AESSEQAPYSPLAVGALSMWPEQRRATWNGRPLELTSSEFNLLEVLARNAGKPVSKQTLS 180 + A + G L++WP RRATW G LELT +EF+LLEVLAR+AG+ VSK+ +S Sbjct: 139 GADAGAA-AGAIHAGPLALWPASRRATWLGSALELTGTEFSLLEVLARHAGRLVSKEDIS 197 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 Q RPLARFDR IDVH+SSIRQK+ + I +V +GYQ + + Sbjct: 198 LQAFDRPLARFDRRIDVHISSIRQKLGQRPDGQPWIVSVRGMGYQLLAD 246 >NMB0595 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Nme Neisseria meningitidis MC58 Length = 225 Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 132/228 (57%), Positives = 168/228 (73%), Gaps = 4/228 (1%) Query: 1 MSKVLLIDDDVELVEMLKEYLEQEKFEVNVAHDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 MS+VLL+DDD L E+L EYL E V DGEAG E L+GQY + VLD MMP++NG Sbjct: 1 MSRVLLVDDDALLTELLTEYLSAEGLNVRSVPDGEAGVQEILSGQYDVVVLDSMMPKMNG 60 Query: 61 VDTLRRIRAKSNMPVVMLTAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILRRAS 120 +D L+ +RA+S +P++MLTAKGDD DRIIGLE+GADDYVPKPCTPRE+ ARI AILRRA Sbjct: 61 LDVLKNVRARSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQ 120 Query: 121 AESSEQAPYSPLAVGALSMWPEQRRATWNGRPLELTSSEFNLLEVLARNAGKPVSKQTLS 180 + + ++V + ++P +R+A+ PLELTS+EFNLLEVL R+AG+ VSK+TLS Sbjct: 121 HSGEQNNAPNSISVSDVVLYPAKRQASVKDMPLELTSTEFNLLEVLMRHAGQVVSKETLS 180 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIK 228 + L R LA+FDR+IDVH+SSIR K+ D S IQTV LGY F+K Sbjct: 181 VEALDRKLAKFDRSIDVHISSIRHKLG----DASLIQTVRGLGYLFVK 224 >NMA0798 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain NmA Neisseria meningitidis Z2491 Length = 225 Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 132/228 (57%), Positives = 168/228 (73%), Gaps = 4/228 (1%) Query: 1 MSKVLLIDDDVELVEMLKEYLEQEKFEVNVAHDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 MS+VLL+DDD L E+L EYL E V DGEAG E L+GQY + VLD MMP++NG Sbjct: 1 MSRVLLVDDDALLTELLTEYLSAEGLNVRSVPDGEAGVQEILSGQYDVVVLDSMMPKMNG 60 Query: 61 VDTLRRIRAKSNMPVVMLTAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILRRAS 120 +D L+ +RA+S +P++MLTAKGDD DRIIGLE+GADDYVPKPCTPRE+ ARI AILRRA Sbjct: 61 LDVLKNVRARSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQ 120 Query: 121 AESSEQAPYSPLAVGALSMWPEQRRATWNGRPLELTSSEFNLLEVLARNAGKPVSKQTLS 180 + + ++V + ++P +R+A+ PLELTS+EFNLLEVL R+AG+ VSK+TLS Sbjct: 121 HSGEQNNAPNSISVSDVVLYPAKRQASVKDMPLELTSTEFNLLEVLMRHAGQVVSKETLS 180 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIK 228 + L R LA+FDR+IDVH+SSIR K+ D S IQTV LGY F+K Sbjct: 181 VEALDRKLAKFDRSIDVHISSIRHKLG----DASLIQTVRGLGYLFVK 224 >YPO2998 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ype Yersinia pestis Length = 227 Score = 239 bits (610), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 113/225 (50%), Positives = 162/225 (72%), Gaps = 1/225 (0%) Query: 3 KVLLIDDDVELVEMLKEYLEQEKFEVNVAHDGEAGAAEALTGQYAIAVLDVMMPRLNGVD 62 K+LL+DDD+EL MLKEYL E F G+AG AL+G Y +LD+M+P ++G+D Sbjct: 2 KILLVDDDLELGTMLKEYLGGEGFTAKHVLTGKAGIDGALSGDYTALILDIMLPDMSGID 61 Query: 63 TLRRIRAKSNMPVVMLTAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILRRASAE 122 LR++R KS +P++MLTAKGD+ DR+IGLE+GADDY+PKPC PRE+ AR+RA+LRR + Sbjct: 62 VLRQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFEEQ 121 Query: 123 SSEQAPYSPLAV-GALSMWPEQRRATWNGRPLELTSSEFNLLEVLARNAGKPVSKQTLSE 181 + + S + G L++ P R + W G+P +LT+SEFNLLE+L R+ + V+K LS+ Sbjct: 122 PTLSSIDSGIITQGGLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDELSD 181 Query: 182 QGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQF 226 +GLGRP +DR++DVH+S+IRQK+AAL + I+TV +GY+ Sbjct: 182 KGLGRPREAYDRSVDVHISNIRQKLAALPGNHLNIETVRSIGYRI 226 >VC2692 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Vch Vibrio cholerae Length = 228 Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 107/234 (45%), Positives = 159/234 (67%), Gaps = 12/234 (5%) Query: 1 MSKVLLIDDDVELVEMLKEYLEQEKFEVNVAHDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 M+ +LLIDDD EL +L E L+ E FE++ A+DGEAG A A++ + + +LDVMMP+LNG Sbjct: 1 MAHILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLA-AVSDEIDLILLDVMMPKLNG 59 Query: 61 VDTLRRIRAKSNMPVVMLTAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILRRAS 120 ++TL+R+R K PV+MLTAKG++ DR+IGLELGADDY+PKP + RE+ ARIRAILRR Sbjct: 60 METLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRT- 118 Query: 121 AESSEQAPYSP-----LAVGALSMWPEQRRATWNGRPLELTSSEFNLLEVLARNAGKPVS 175 Q +P + + ++P ++ A G+ LELT++EF LL ++ G ++ Sbjct: 119 -----QNGLTPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLT 173 Query: 176 KQTLSEQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 K+ LS + LG+ LA FDR ID+H+S++R+K+ K+ I+T+ GY ++E Sbjct: 174 KEMLSIEVLGKHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGYLMVQE 227