BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0157.p (371 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z2771 [L] COG0322 Nuclease subunit of the excinuclease complex E... 212 9e-55 ECs2447 [L] COG0322 Nuclease subunit of the excinuclease complex... 212 9e-55 ydjQ [L] COG0322 Nuclease subunit of the excinuclease complex Ec... 212 1e-54 STM1309 [L] COG0322 Nuclease subunit of the excinuclease complex... 195 2e-49 CPn0940 [L] COG0322 Nuclease subunit of the excinuclease complex... 79 1e-14 >Z2771 [L] COG0322 Nuclease subunit of the excinuclease complex EcZ Escherichia coli O157:H7 EDL933 Length = 295 Score = 212 bits (540), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 123/293 (41%), Positives = 177/293 (60%), Gaps = 17/293 (5%) Query: 74 PRATFNAPQPAAHRAATFSYPLHIDRASIEALPAACGVYILRGVNDQA-LYVGRSVNLRS 132 PR F A AA + YP H+ R+ + LP GVY+ G +D LY+G+SVN+RS Sbjct: 8 PRLEFEA-------AAIYEYPEHL-RSFLNDLPTRPGVYLFHGESDTMPLYIGKSVNIRS 59 Query: 133 RVMAHLHNHEEQFLIGQTRRIECRRTAGELGAALLESSLLRDLRPAHNKKQRTKRGLFTL 192 RV++HL +E ++ Q+RRI TAGE+GA LLE+ L+++ +P NK+ R R L L Sbjct: 60 RVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCAL 119 Query: 193 RLNDAGQPQVAQVEEREFSRAENLFGIYTSERAAQEALQKMVERHGLCSIATGLEQPDGI 252 +LN+ + V +E +FSRA NLFG++ + RAA +ALQ + + LC GLE P Sbjct: 120 QLNEK-RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQSIADEQKLCYGLLGLE-PLSR 177 Query: 253 GMACFGRQIRRCRGACTGEETHEQHQQRLMQALEDLRILPWPYAGPMALVEQGDGWQQVH 312 G ACF ++RC GAC G+E+HE+H RL Q+LE LR++ WP+ G +AL EQ Q H Sbjct: 178 GRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWPWQGAVALKEQHPEMTQYH 237 Query: 313 VIDHWRYLGSLD--RDNRQLASRPAASLKGFDLDSYKLMIQPYLLGQLELRPL 363 +I +W +LG+++ + L PA GFD D YK++ +P L G E+ L Sbjct: 238 IIQNWLWLGAVNSLEEATTLIRTPA----GFDHDGYKILCKPLLSGNYEITEL 286 >ECs2447 [L] COG0322 Nuclease subunit of the excinuclease complex Ecs Escherichia coli O157:H7 Length = 295 Score = 212 bits (540), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 123/293 (41%), Positives = 177/293 (60%), Gaps = 17/293 (5%) Query: 74 PRATFNAPQPAAHRAATFSYPLHIDRASIEALPAACGVYILRGVNDQA-LYVGRSVNLRS 132 PR F A AA + YP H+ R+ + LP GVY+ G +D LY+G+SVN+RS Sbjct: 8 PRLEFEA-------AAIYEYPEHL-RSFLNDLPTRPGVYLFHGESDTMPLYIGKSVNIRS 59 Query: 133 RVMAHLHNHEEQFLIGQTRRIECRRTAGELGAALLESSLLRDLRPAHNKKQRTKRGLFTL 192 RV++HL +E ++ Q+RRI TAGE+GA LLE+ L+++ +P NK+ R R L L Sbjct: 60 RVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCAL 119 Query: 193 RLNDAGQPQVAQVEEREFSRAENLFGIYTSERAAQEALQKMVERHGLCSIATGLEQPDGI 252 +LN+ + V +E +FSRA NLFG++ + RAA +ALQ + + LC GLE P Sbjct: 120 QLNEK-RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQSIADEQKLCYGLLGLE-PLSR 177 Query: 253 GMACFGRQIRRCRGACTGEETHEQHQQRLMQALEDLRILPWPYAGPMALVEQGDGWQQVH 312 G ACF ++RC GAC G+E+HE+H RL Q+LE LR++ WP+ G +AL EQ Q H Sbjct: 178 GRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWPWQGAVALKEQHPEMTQYH 237 Query: 313 VIDHWRYLGSLD--RDNRQLASRPAASLKGFDLDSYKLMIQPYLLGQLELRPL 363 +I +W +LG+++ + L PA GFD D YK++ +P L G E+ L Sbjct: 238 IIQNWLWLGAVNSLEEATTLIRTPA----GFDHDGYKILCKPLLSGNYEITEL 286 >ydjQ [L] COG0322 Nuclease subunit of the excinuclease complex Eco Escherichia coli K12 Length = 295 Score = 212 bits (540), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 123/293 (41%), Positives = 177/293 (60%), Gaps = 17/293 (5%) Query: 74 PRATFNAPQPAAHRAATFSYPLHIDRASIEALPAACGVYILRGVNDQA-LYVGRSVNLRS 132 PR F A AA + YP H+ R+ + LP GVY+ G +D LY+G+SVN+RS Sbjct: 8 PRLEFEA-------AAIYEYPEHL-RSFLNDLPTRPGVYLFHGESDTMPLYIGKSVNIRS 59 Query: 133 RVMAHLHNHEEQFLIGQTRRIECRRTAGELGAALLESSLLRDLRPAHNKKQRTKRGLFTL 192 RV++HL +E ++ Q+RRI TAGE+GA LLE+ L+++ +P NK+ R R L L Sbjct: 60 RVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCAL 119 Query: 193 RLNDAGQPQVAQVEEREFSRAENLFGIYTSERAAQEALQKMVERHGLCSIATGLEQPDGI 252 +LN+ + V +E +FSRA NLFG++ + RAA +ALQ + + LC GLE P Sbjct: 120 QLNEK-RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTIADEQKLCYGLLGLE-PLSR 177 Query: 253 GMACFGRQIRRCRGACTGEETHEQHQQRLMQALEDLRILPWPYAGPMALVEQGDGWQQVH 312 G ACF ++RC GAC G+E+HE+H RL Q+LE LR++ WP+ G +AL EQ Q H Sbjct: 178 GRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWPWQGAVALKEQHPEMTQYH 237 Query: 313 VIDHWRYLGSLD--RDNRQLASRPAASLKGFDLDSYKLMIQPYLLGQLELRPL 363 +I +W +LG+++ + L PA GFD D YK++ +P L G E+ L Sbjct: 238 IIQNWLWLGAVNSLEEATTLIRTPA----GFDHDGYKILCKPLLSGNYEITEL 286 >STM1309 [L] COG0322 Nuclease subunit of the excinuclease complex Sty Salmonella typhimurium LT2 Length = 302 Score = 195 bits (495), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 118/297 (39%), Positives = 171/297 (57%), Gaps = 19/297 (6%) Query: 68 LRHAGLPRATFNAPQPAAHRAATFSYPLHIDRASIEALPAACGVYILRGVNDQ-ALYVGR 126 +R PR F A AA + YP H+ R + PA GVYI +D LY+G+ Sbjct: 11 VRRQSAPRLEFEA-------AAIYEYPEHL-RPFLSEAPALPGVYIFHSESDTLPLYIGK 62 Query: 127 SVNLRSRVMAHLHNHEEQFLIGQTRRIECRRTAGELGAALLESSLLRDLRPAHNKKQRTK 186 SVN+RSRV++HL +E ++ Q RRI TAGE+GA LLE+ L+++ +P NK+ R Sbjct: 63 SVNIRSRVLSHLRTPDEATMLRQARRISWICTAGEMGALLLEARLIKEQQPLFNKRLRRN 122 Query: 187 RGLFTLRLNDAGQPQVAQVEEREFSRAENLFGIYTSERAAQEALQKMVERHGLCSIATGL 246 R L +L+L++ + +V +FS NLFG++ + RAA ++LQ + + LC GL Sbjct: 123 RQLCSLQLSEQ-KIEVVSARSVDFSHEPNLFGLFANRRAALQSLQNLADEQKLCYGLLGL 181 Query: 247 EQPDGIGMACFGRQIRRCRGACTGEETHEQHQQRLMQALEDLRILPWPYAGPMALVEQGD 306 E P G ACF ++RC GAC G+ET + H RL +LE LR++ WP+ G +AL E Sbjct: 182 E-PVSRGRACFRFALKRCAGACCGQETPQAHFLRLQASLERLRVVCWPWKGAIALKESRP 240 Query: 307 GWQQVHVIDHWRYLG---SLDRDNRQLASRPAASLKGFDLDSYKLMIQPYLLGQLEL 360 Q H+I++W +LG SLD + L PA GFD D YK++ +P + GQ E+ Sbjct: 241 QMTQFHIINNWLWLGAVPSLD-EAATLVRTPA----GFDQDGYKILCKPLMSGQYEI 292 >CPn0940 [L] COG0322 Nuclease subunit of the excinuclease complex Cpn Chlamydophila pneumoniae CWL029 Length = 603 Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 105/207 (50%), Gaps = 18/207 (8%) Query: 95 LHIDRASIEALPAACGVYILRGVNDQALYVGRSVNLRSRVMAHLHNHEEQ-----FLIGQ 149 + I+ S++ +P++ GVY+++ V+DQ LY+G++ NL++R+ ++ H + FL+ + Sbjct: 1 MRIEDFSLKLIPSSPGVYLMKDVHDQVLYIGKAKNLKNRLASYFHEKGDSRERIPFLMKK 60 Query: 150 TRRIECRRTAGELGAALLESSLLRDLRPAHNKKQRTKRGLFTLRLN-DAGQPQVAQVEER 208 T IE + E A LLE++L++ P +N + + F L ++ P+V + + Sbjct: 61 TASIETIVVSNETEALLLENNLIKQHHPKYNVLLKDDKTFFCLAISLSHSWPKVEAIRTK 120 Query: 209 EFSRAEN--LFGIYTSERAAQEALQKMVERHGL--CSIATGL--EQPDGIGMACFGRQIR 262 + ++ +FG Y S A L+ + + L CS ++P C ++ Sbjct: 121 AITSSQRQLIFGPYVSAEACHTLLEVISQWFPLRTCSDREFALRKRP------CILYDMK 174 Query: 263 RCRGACTGEETHEQHQQRLMQALEDLR 289 RC C G T E++Q L +A+ L+ Sbjct: 175 RCLAPCVGYCTPEEYQGTLDKAILFLK 201