BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0145.p (445 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll5484 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 137 4e-32 AGc1534 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 124 5e-28 CC3644 Non COG 122 2e-27 SMc03176 [J] COG1236 Predicted exonuclease of the beta-lactamase... 121 3e-27 >mll5484 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Mlo Mesorhizobium loti Length = 335 Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 80/177 (45%), Positives = 106/177 (59%), Gaps = 8/177 (4%) Query: 151 RVGHGHYLAAAPGAGILRARLGAEI--NLQPLPYGETITHNGVRLSLHPAGHVLGSAQLR 208 R GH LA I+ R G + Q GETI + V +S HPAGHVLGSAQ+ Sbjct: 43 RSGHRSVLATQQTLDIMALRYGEDFAGTTQAARLGETIALDSVSVSFHPAGHVLGSAQIS 102 Query: 209 MEHEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRWQPQREIFEEINQWW 268 +EH+G VASGDYK + D TCAPFEP+RCD FITE+TFG+P++R P EEI + Sbjct: 103 VEHQGTRIVASGDYKRQKDATCAPFEPIRCDVFITEATFGLPVFRHPPDT---EEIARLL 159 Query: 269 RSNAA-EGRASVLFCYSFGKAQRILHGI-DASIG-PIVCHGAVEPLNRLYREAGIAL 322 +S A R+ ++ Y+ GKAQR++ + DA P+ HGA+ L+ Y+ GI L Sbjct: 160 KSAAQFPERSHLVGAYALGKAQRVMRLLRDAGYDRPLYIHGALARLSEYYQSQGIDL 216 Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 65/131 (49%), Positives = 87/131 (66%), Gaps = 6/131 (4%) Query: 1 LHPAGHVLGSAQLRMEHEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRW 60 HPAGHVLGSAQ+ +EH+G VASGDYK + D TCAPFEP+RCD FITE+TFG+P++R Sbjct: 89 FHPAGHVLGSAQISVEHQGTRIVASGDYKRQKDATCAPFEPIRCDVFITEATFGLPVFRH 148 Query: 61 QPQREIFEEINQWWRSNAA-EGRASVLFCYSFGKAQRILHGI-DASIG-PIVCHGAVEPL 117 P EEI + +S A R+ ++ Y+ GKAQR++ + DA P+ HGA+ L Sbjct: 149 PPDT---EEIARLLKSAAQFPERSHLVGAYALGKAQRVMRLLRDAGYDRPLYIHGALARL 205 Query: 118 NRLYREAGIAL 128 + Y+ GI L Sbjct: 206 SEYYQSQGIDL 216 >AGc1534 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 352 Score = 124 bits (311), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 100/180 (55%), Gaps = 14/180 (7%) Query: 151 RVGHGHYLAAAPGAGILRARLGAEI--NLQPLPYGETITHNGVRLSLHPAGHVLGSAQLR 208 R GHG LA I+R R G + + Q + +GET+ NGV + HPAGHVLGSAQ+ Sbjct: 59 RAGHGAVLATRQTLDIMRIRYGEDFCGSEQAVGFGETVEVNGVIVGFHPAGHVLGSAQIS 118 Query: 209 MEHEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRW-QPQREI---FEEI 264 +E G VASGDYK D TCAPFE V CD FITE+TFG+P++ P+ EI I Sbjct: 119 VEMNGLRIVASGDYKRGIDPTCAPFETVPCDVFITEATFGLPVFHHPLPRVEIGKLLTSI 178 Query: 265 NQWWRSNAAEGRASVLFCYSFGKAQRILHGI--DASIGPIVCHGAVEPLNRLYREAGIAL 322 Q+ R ++ YS GKAQR++ + + PI HGA+ L Y GI L Sbjct: 179 KQF------PDRTHLVGAYSLGKAQRVIRLLRDNGYADPIYIHGALARLCDYYVSQGIDL 232 Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/134 (45%), Positives = 76/134 (56%), Gaps = 12/134 (8%) Query: 1 LHPAGHVLGSAQLRMEHEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRW 60 HPAGHVLGSAQ+ +E G VASGDYK D TCAPFE V CD FITE+TFG+P++ Sbjct: 105 FHPAGHVLGSAQISVEMNGLRIVASGDYKRGIDPTCAPFETVPCDVFITEATFGLPVFHH 164 Query: 61 -QPQREI---FEEINQWWRSNAAEGRASVLFCYSFGKAQRILHGI--DASIGPIVCHGAV 114 P+ EI I Q+ R ++ YS GKAQR++ + + PI HGA+ Sbjct: 165 PLPRVEIGKLLTSIKQF------PDRTHLVGAYSLGKAQRVIRLLRDNGYADPIYIHGAL 218 Query: 115 EPLNRLYREAGIAL 128 L Y GI L Sbjct: 219 ARLCDYYVSQGIDL 232 >CC3644 Non COG Length = 342 Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/183 (40%), Positives = 100/183 (54%), Gaps = 20/183 (10%) Query: 151 RVGHGHYLAAAPGAGILRARLGAEI--NLQPLPYGETITHNGVRLSLHPAGHVLGSAQLR 208 R GHG A I+ R G + +P+PYGE+ T +GV ++L PAGHVLGSAQ Sbjct: 49 RAGHGVVAATPETLAIMAVRYGEDFAGRREPIPYGESFTRDGVSVTLVPAGHVLGSAQAV 108 Query: 209 MEHEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRWQPQ----REIFEEI 264 + +G V SGDYK D TCA FEPV CD FITE+TFG+P++R R + + Sbjct: 109 VRWKGLTMVVSGDYKRRRDPTCARFEPVPCDVFITEATFGLPVFRHPDDAGEIRSLLLSV 168 Query: 265 NQWWRSNAAEGRASVLFCYSFGKAQRILH-----GIDASIGPIVCHGAVEPLNRLYREAG 319 Q+ R ++ Y+ GKAQR++ G D + I HGA+E LN LY G Sbjct: 169 AQF------PDRCHLVGAYALGKAQRVIRLLREAGWDKT---IYVHGALERLNALYEAHG 219 Query: 320 IAL 322 + L Sbjct: 220 VDL 222 Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/137 (43%), Positives = 76/137 (55%), Gaps = 18/137 (13%) Query: 1 LHPAGHVLGSAQLRMEHEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRW 60 L PAGHVLGSAQ + +G V SGDYK D TCA FEPV CD FITE+TFG+P++R Sbjct: 95 LVPAGHVLGSAQAVVRWKGLTMVVSGDYKRRRDPTCARFEPVPCDVFITEATFGLPVFRH 154 Query: 61 QPQ----REIFEEINQWWRSNAAEGRASVLFCYSFGKAQRILH-----GIDASIGPIVCH 111 R + + Q+ R ++ Y+ GKAQR++ G D + I H Sbjct: 155 PDDAGEIRSLLLSVAQF------PDRCHLVGAYALGKAQRVIRLLREAGWDKT---IYVH 205 Query: 112 GAVEPLNRLYREAGIAL 128 GA+E LN LY G+ L Sbjct: 206 GALERLNALYEAHGVDL 222 >SMc03176 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Sme Sinorhizobium meliloti Length = 336 Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 96/179 (53%), Gaps = 12/179 (6%) Query: 151 RVGHGHYLAAAPGAGILRARLGAEI--NLQPLPYGETITHNGVRLSLHPAGHVLGSAQLR 208 R GHGH LA I+R R G + +GETI+ GVR+ PAGHVLGSAQ+ Sbjct: 43 RAGHGHVLATRETLDIMRLRYGDDFCGASDVARFGETISIGGVRVRFQPAGHVLGSAQIS 102 Query: 209 MEHEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRWQPQREIFEEINQWW 268 +E +G V SGDYK D TC FEPV CD FITE+TFG+P++ + + Q Sbjct: 103 VEADGTRIVVSGDYKRRPDPTCPSFEPVACDVFITEATFGLPVFHHPDDKGEIARLLQSL 162 Query: 269 RSNAAEGRASVLFCYSFGKAQRIL-----HGIDASIGPIVCHGAVEPLNRLYREAGIAL 322 R RA V+ Y+ GKAQR++ G D PI HGA+ L Y+ GI L Sbjct: 163 RQFPE--RAHVVGAYALGKAQRLIALIRQQGYDE---PIHIHGALARLCEYYQSQGIDL 216 Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/133 (43%), Positives = 73/133 (54%), Gaps = 10/133 (7%) Query: 1 LHPAGHVLGSAQLRMEHEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRW 60 PAGHVLGSAQ+ +E +G V SGDYK D TC FEPV CD FITE+TFG+P++ Sbjct: 89 FQPAGHVLGSAQISVEADGTRIVVSGDYKRRPDPTCPSFEPVACDVFITEATFGLPVFHH 148 Query: 61 QPQREIFEEINQWWRSNAAEGRASVLFCYSFGKAQRIL-----HGIDASIGPIVCHGAVE 115 + + Q R RA V+ Y+ GKAQR++ G D PI HGA+ Sbjct: 149 PDDKGEIARLLQSLRQFPE--RAHVVGAYALGKAQRLIALIRQQGYDE---PIHIHGALA 203 Query: 116 PLNRLYREAGIAL 128 L Y+ GI L Sbjct: 204 RLCEYYQSQGIDL 216