BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0143.p         (312 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TM0854 [T] COG1639 Predicted signal transduction protein Tma The...    66   1e-10

>TM0854 [T] COG1639 Predicted signal transduction protein Tma Thermotoga
           maritima
          Length = 285

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 98/204 (48%), Gaps = 12/204 (5%)

Query: 19  LPAPSGVRLKIMQMCQQEDIALPDLVAQVQGDPVLAGRLIQIANIPNINKGRMVAAVNVE 78
           LP+P+ V  +I+ +C + D +  ++   +  D  L+ R++++AN       R +  ++ E
Sbjct: 16  LPSPNVVVQRIIAVCSKPDASSTEVANTLMMDASLSARVLKLANSAYYGVPRKITTLS-E 74

Query: 79  LLLMVGLHAVRQMALAISLTESARRGDCKEFDYDLFWSRSTAMACAGQALGDLLQVAPPA 138
            ++++G   VR +AL++   +   +      D +  W    A A A + + + +      
Sbjct: 75  AVMILGFKTVRNLALSVFTYDMVFKNSSSGIDREKLWEHFIASAIASETVAETMGYPLKE 134

Query: 139 EMFTIGLLXRADIGRLGLASARPKRYGELLASGVQGSQLRQE-----EKALFGFNHLELA 193
           E+F  GLL   D+G++         + ++L +  + +Q  ++     E+ L    H E+ 
Sbjct: 135 EIFIAGLLH--DLGKV----VYDLLFSDILETEAKIAQKTKKNLIDIEEELGIPPHSEVG 188

Query: 194 AAMMQDWHFPKLFCETVLYHHDAD 217
           A +++ W+FP L   +  +HH+ +
Sbjct: 189 AKLLRKWNFPDLLVLSAEFHHNVE 212