BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0137.p (240 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0797 [K] COG1802 Transcriptional regulators Pae Pseudomonas ae... 379 e-105 VC1335 [K] COG1802 Transcriptional regulators Vch Vibrio cholerae 214 2e-55 BMEII0281 [K] COG1802 Transcriptional regulators Bme Brucella me... 108 1e-23 mll6988 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 95 2e-19 SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium... 90 4e-18 >PA0797 [K] COG1802 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 240 Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/216 (85%), Positives = 199/216 (92%) Query: 10 AERDGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLL 69 A DGETLSEHVFRKIQSAIV GEIAPGSKISEPELARTYGISRGPLREAIHRLEG LL Sbjct: 11 AHDDGETLSEHVFRKIQSAIVSGEIAPGSKISEPELARTYGISRGPLREAIHRLEGLRLL 70 Query: 70 VRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLETHEKDEA 129 VRVPHVGARVVSL+ L+EL++IRESLEGMACRLAA+RMS+AE+DELRRVL+THE+DEA Sbjct: 71 VRVPHVGARVVSLSHAELIELYEIRESLEGMACRLAAERMSQAEIDELRRVLDTHERDEA 130 Query: 130 FQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAAPNRPRQAFA 189 FQAGRGYYQQEGDYDFHY+IIQ SGN LTR+LCGELYQL RMYRIQYS PNRPRQAFA Sbjct: 131 FQAGRGYYQQEGDYDFHYRIIQGSGNATLTRMLCGELYQLVRMYRIQYSTTPNRPRQAFA 190 Query: 190 EHHRILDALADGDGELADLLMRRHIGASRRNIEHQI 225 EHHRILDA+AD DGELA+LLMRRHI ASRRNIE Q+ Sbjct: 191 EHHRILDAIADRDGELAELLMRRHISASRRNIERQL 226 >VC1335 [K] COG1802 Transcriptional regulators Vch Vibrio cholerae Length = 235 Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 114/224 (50%), Positives = 152/224 (67%), Gaps = 1/224 (0%) Query: 2 SELIALPGAERDGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIH 61 S L+ E++ T SE++ + AIV+G++APGSKISEPELA+ + +SRGPLREA+ Sbjct: 5 SPLVRQASTEKES-TKSENLTEYLIEAIVEGQLAPGSKISEPELAKQFQVSRGPLREALM 63 Query: 62 RLEGQNLLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVL 121 R+EG L+ R+PH+GARV+ L+ LVEL+ +RE+LEGMA RLAA+ ++ EL L +L Sbjct: 64 RVEGLGLIERIPHIGARVIQLSPTKLVELYAVREALEGMAARLAARNITEIELAGLESLL 123 Query: 122 ETHEKDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAAP 181 TH G Y+ Q+GD+DFHY+IIQA NQ L +LC ELY L RMYR Q + Sbjct: 124 STHSTHIDQVEGASYFHQQGDFDFHYRIIQACRNQQLIGLLCDELYHLLRMYRYQSPRSH 183 Query: 182 NRPRQAFAEHHRILDALADGDGELADLLMRRHIGASRRNIEHQI 225 +RP +A EH IL A+ D ELA++LMRRHI SR+ IE QI Sbjct: 184 SRPVEALEEHKFILRAIRQRDEELAEMLMRRHISRSRQLIEQQI 227 >BMEII0281 [K] COG1802 Transcriptional regulators Bme Brucella melitensis Length = 238 Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%) Query: 17 LSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVG 76 L + V ++ I G+ APG+ + + +A +GISR PLREA+ LE L++ +P G Sbjct: 22 LLDEVAEALRERIYAGDYAPGAILRQEHIATEFGISRTPLREALRVLERDGLVIHLPGRG 81 Query: 77 ARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLETHEKDEAFQAGRGY 136 RV S L L++ + +RE L+G+A R AA+R S A++ +LR + +K + Y Sbjct: 82 VRVASADLTRLIDAYAVREVLDGVAARFAAERASDADIAKLRAHVAGQDKVVDPWDPKAY 141 Query: 137 YQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAAPNRPRQAFAEHHRILD 196 Q + DFH ++ +GN L L ++++ +S + +R R A EH I++ Sbjct: 142 TQ--SNVDFHMAVMNTAGNASLI-AFVPLLRMTSQVFAPSFSLSVDRARDAIREHAAIVE 198 Query: 197 ALADGDGELADLLMRRHIGASRRNIE 222 A+A DGE A+ L R HI A+ +E Sbjct: 199 AIAARDGEEAERLARAHIRATTARLE 224 >mll6988 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 220 Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 4/193 (2%) Query: 22 FRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVGARVVS 81 + +Q A+ G PG ++ E+A G+SR P+REA RL L+V P+ G V Sbjct: 17 YNHVQRALRLGRYKPGDRLIPEEIAAEIGMSRMPVREAFRRLASDGLVVLRPNRGCVVAG 76 Query: 82 LTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLETHEKDEAFQAGRGYYQQEG 141 LT++ L E+F+IR LEG+A RLA R+ E +EL R+LE E+ A Q+G G + Sbjct: 77 LTVDELFEIFEIRSVLEGLAVRLAVPRIDDEEFEELDRLLERMER--AGQSGGGDWVVRH 134 Query: 142 DYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAAPNRPRQAFAEHHRILDALADG 201 +FH +I S L + + RI + N+P A EH ++ AL G Sbjct: 135 Q-EFHGRICALSQRPKLIHQISALHVVIEPYMRIWFDDC-NKPLSAREEHAAVIAALRSG 192 Query: 202 DGELADLLMRRHI 214 D A+ +M+ H+ Sbjct: 193 DAHHAEQVMQEHV 205 >SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 224 Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 108/208 (51%), Gaps = 15/208 (7%) Query: 17 LSEHVFRK----IQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRV 72 +SE++F K I++ IV GE PG ++ E +LA +G+SR P+REA+ +L L+ Sbjct: 1 MSENIFYKLRDDIENGIVTGEFEPGERLDETQLAMRFGVSRTPIREALMQLSAIGLVEIR 60 Query: 73 PHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLETHEK-DEAF- 130 P GA VV + + E+F++ LEGMA LAA+R + + L L HEK EA Sbjct: 61 PRRGAVVVDPAPQRVYEMFEVMAELEGMAGALAARRHTEEDSAAL---LAAHEKCREAVL 117 Query: 131 --QAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAAPNRPRQAF 188 + R YY+ E FH I AS + L C L++ R YR NR + +F Sbjct: 118 SEETDRYYYENE---IFHRAIYTASHSGFLEE-QCTTLHRRLRPYRRLQLRVRNRMKVSF 173 Query: 189 AEHHRILDALADGDGELADLLMRRHIGA 216 EH I++A+ G+ + A +R H+ Sbjct: 174 REHGEIVEAILSGNTDGAREGLRSHVAV 201