BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0128.p         (145 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1359 [T] COG0589 Universal stress protein UspA and related nu...    94   1e-19
RSp1159 [T] COG0589 Universal stress protein UspA and related nu...    90   2e-18
AGc878 [T] COG0589 Universal stress protein UspA and related nuc...    86   2e-17
MA2866 [T] COG0589 Universal stress protein UspA and related nuc...    74   8e-14
MTH993 [T] COG0589 Universal stress protein UspA and related nuc...    72   5e-13

>RSc1359 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Rso Ralstonia solanacearum
          Length = 168

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 78/149 (52%), Gaps = 9/149 (6%)

Query: 1   MFKNILLATDGSRLCNESVKAAIALAKSCGSTLVGLSVAGNLRALSIPEVSVGVDVERTD 60
           MF++IL+ TDGS L  ++V  A+  AK+ G+ L   +           E+ V      T 
Sbjct: 25  MFQHILIPTDGSELSRKAVAGALDFAKTLGARLTAYTCLEEYPYTPFSEIVV-----ETP 79

Query: 61  EAGRERALASVEMITA----MAREEGVPCTVQVAQGGRPYEEIMRVAEREHCDAIIMASK 116
           +A +ER  A   ++       AR  G+ C   ++    PY  I+  AER  CD I MAS 
Sbjct: 80  QAFKERVEAQARVVLKDVEDTARAAGIDCDTDMSCFAVPYMGIIDAAERHGCDVIFMASH 139

Query: 117 ARSTLGRLLLGSQTQKLLAHSKVPVLVYR 145
            R  L  LLLGS+TQK+L H+ +PV+VYR
Sbjct: 140 GRRGLAGLLLGSETQKVLTHTAIPVIVYR 168


>RSp1159 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Rso Ralstonia solanacearum
          Length = 146

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 1/146 (0%)

Query: 1   MFKNILLATDGSRLCNESVKAAIALAKSCGSTLVGLSVAGNLRALSIPEVSVGVDVERTD 60
           MF +ILL TDGS  C +++  A+ LA + G  L   +   +  +++    +         
Sbjct: 1   MFTHILLPTDGSSQCTKAIDGALKLAHAAGCRLTAYTCIEDFPSMAYSGGAGECPYSHYM 60

Query: 61  EAGRERALASVEMITAMAREEGVPCTVQVAQGGRPYEEIMRVAEREHCDAIIMASKA-RS 119
           E  +  A   ++ I   AREEGV     V Q   PY  I+  A R  CD I MAS   RS
Sbjct: 61  EQVQGYAKDCIDRIAERAREEGVEFDSDVTQFAEPYLGILDAARRHACDVIFMASHGHRS 120

Query: 120 TLGRLLLGSQTQKLLAHSKVPVLVYR 145
             GRLL+G++T+K+L ++ +PV+VYR
Sbjct: 121 LTGRLLIGNETRKVLTYAHIPVVVYR 146


>AGc878 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 160

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 9/149 (6%)

Query: 1   MFKNILLATDGSRLCNESVKAAIALAKSCGS--TLVGLSVAGNLRALSIPEVSVGVDVE- 57
           MFK+IL+ TDGS L   ++    ALA+  G+  T+V +S   ++ A  + +++   + E 
Sbjct: 16  MFKHILIPTDGSPLAQIAIDQGFALAREAGAKVTVVTVSEPFHVIASDVEDIAAIAEEEF 75

Query: 58  -RTDEAGRERALASVEMITAMAREEGVPCTVQVAQGGRPYEEIMRVAEREHCDAIIMASK 116
            R +EA  E  L   +   A A   G+ C   +A+ GRP E I+ +A+R  CD I MAS 
Sbjct: 76  HRCEEA--EHLLRDTQ---AHAAAMGLDCEALLARAGRPDEAIIEIADRTGCDLIAMASH 130

Query: 117 ARSTLGRLLLGSQTQKLLAHSKVPVLVYR 145
            R +   +LLGS T K+L +SK+PVLVYR
Sbjct: 131 RRRSFIEMLLGSVTAKVLKNSKIPVLVYR 159


>MA2866 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Mac Methanosarcina
           acetivorans str.C2A
          Length = 152

 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 10/145 (6%)

Query: 2   FKNILLATDGSRLCNESVKAAIALAKSCGSTLVGLSVAGNLRALSIPEVSVGVDVERTDE 61
           F+ I++ATDGS     +   AI LA+  G T+  + V       S+   +V  D ER +E
Sbjct: 6   FRKIMIATDGSICSRIAANYAIELARLSGGTVYAVYVVSTDYFSSM---AVDFDWERMNE 62

Query: 62  AGRERALASVEMIT---AMAREEGVPCTVQVAQGGRPYEEIMRVAEREHCDAIIMASKAR 118
           A ++   A+V  +     M R +  P  ++    G P +E++R AE    D +IM +  +
Sbjct: 63  ALKKEGHAAVNYVKRAGEMDRVDVAPILLE----GHPADELIRYAEDNEMDVVIMGTLGK 118

Query: 119 STLGRLLLGSQTQKLLAHSKVPVLV 143
           + L RLLLGS  +K++ H KVPV+V
Sbjct: 119 TGLDRLLLGSVAEKVVRHCKVPVMV 143


>MTH993 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Mth Methanothermobacter
           thermautotrophicus
          Length = 143

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 6/145 (4%)

Query: 1   MFKNILLATDGSRLCNESVKAAIALAKSCGSTLVGLSVAGNLRALSIPEVSVGVDVERTD 60
           M+  ILL TDGS+  N++ + AI +A+  G+ ++ L+V      + +P   + +   R  
Sbjct: 1   MYSKILLPTDGSKQANKAAEHAIWIARESGAEIIALTVMETSSLVGLPADDLII---RLR 57

Query: 61  EAGRERALASVEMITAMAREEG--VPCTVQVAQGGRPYEEIMRVAEREHCDAIIMASKAR 118
           E   E A  S+E +  +  E G  +  TV+  +G  P E I+R  E+E  D ++M +  +
Sbjct: 58  EMLEEEASRSLEAVKKLVEESGADIKLTVRTDEGS-PAEAILRTVEKEGVDLVVMGTSGK 116

Query: 119 STLGRLLLGSQTQKLLAHSKVPVLV 143
             L R LLGS  +K++  +  PVLV
Sbjct: 117 HGLDRFLLGSVAEKVVRSAGCPVLV 141