BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0119.p (487 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 228 3e-59 RSp0840 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 181 3e-45 RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 177 4e-44 RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 177 6e-44 RSc1950 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 174 3e-43 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 228 bits (580), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 217/368 (58%), Gaps = 3/368 (0%) Query: 7 NLKVGARLAIVFAFIVALLAVVSITAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGVNE 66 ++++G RL FA +VALL ++ ++++ N + QIV++RY + + +++ + Sbjct: 5 DMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIKNNGYK 64 Query: 67 QIKYLRGMAIDIGNPAANEKRIGQLDVAVRASKEALDKITARQVTAVGQKKAKALDDARQ 126 L + + + P K + +A+ +A ++ T G+ K DAR Sbjct: 65 ANGILSNLLL-VTTPEQKTKYMSDYAAIRQANAQAYGRLEKLLTTDQGKALFKEQFDARS 123 Query: 127 LFETSRTQFLALIRAGQGDAADEFVLRKITDSQNAYLSLATAFADSQDSQLRAEGAQAVA 186 + S +F AL+ A A ++ Q+ Y L D Q ++ + ++A A Sbjct: 124 AYGASVRKFFALVDADNVQEARALYQGDMSRLQDRYYVLVDKMVDHQAGEMEHDVSEAAA 183 Query: 187 DGALAIQVTLACSAVAVLAAILLGYLMVRSIVKPLNEAVRVAENVAAGDLTTRIEPHSKD 246 GA A + + +A L AI G + R+I +P+N A+ +AE VA G+LT +E ++D Sbjct: 184 QGANAKIQMIVLAVLATLLAIATGAFITRTITRPINHAMHLAEAVAQGNLTHLLEVDTQD 243 Query: 247 ETGQLMAALRKMNDNLVDIVSGVRRSTDSIATASGEIASGNMDLSSRT--XAGSLEETAS 304 E G+L+AAL+ M +NL IVS VR TD+I AS E+ASGN+DLSSRT A SLEETA+ Sbjct: 244 EIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSLEETAA 303 Query: 305 AMEEMTSTVRQNADNARQANQLAATASEVALQGGEIVGRVVTTMEEINQSSRKIVDIIGV 364 AME++TSTV+QNADNA++A++LA+ AS VA +GG+ V + TM IN SSRKIVDIIGV Sbjct: 304 AMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIVDIIGV 363 Query: 365 IDGIAFQT 372 IDGIAFQT Sbjct: 364 IDGIAFQT 371 >RSp0840 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 518 Score = 181 bits (459), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 144/370 (38%), Positives = 208/370 (56%), Gaps = 9/370 (2%) Query: 8 LKVGARLAIVFAFIVALLAVVSITAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGVNEQ 67 LK+G RL + F F+V L + + A ++N + I+QI + Y K ++ Sbjct: 4 LKIGLRLGVAFGFVVLLGLLTAALAVARLNATSGDIEQIASSLYPKTALINTMKINAASM 63 Query: 68 IKYLRGMAIDIGNPAAN---EKRIGQLDVAVRASKEALDKITARQVTAVGQKKAKALDDA 124 LR I AA +K + DV+V+ D + R T GQ K L D Sbjct: 64 ASLLRDAWIAPDAAAAKVPLQKLMELRDVSVKLR----DDLQKRIRTQSGQDLFKRLQDT 119 Query: 125 RQLFETSRTQFLALIRAGQGDAADEFVLRKITDSQNAYLSLATAFADSQDSQLRAEGAQA 184 ++ + R + +A I AG +AA + +L ++ Q+ Y A Q + +A Sbjct: 120 QERYGALRARVIAAINAGDKEAARDLLLTEMPAVQSTYFDALDALVAYQTQLMVDTTGRA 179 Query: 185 VADGALAIQVTLACSAVAVLAAILLGYLMVRSIVKPLNEAVRVAENVAAGDLTTRIEPHS 244 + A + L +A A + A+ G + RSIV+PL++A+ +A+NVA GDL+TRI+ + Sbjct: 180 LTASERAAILLLVMAAAAAVLAVFAGVWITRSIVRPLDQALHLADNVAQGDLSTRIDSRA 239 Query: 245 KDETGQLMAALRKMNDNLVDIVSGVRRSTDSIATASGEIASGNMDLSSRT--XAGSLEET 302 DETGQL+ AL M NL IV V STD+IATASG++A+G+ DLSSRT A SLEET Sbjct: 240 ADETGQLVRALESMRANLATIVQEVHESTDTIATASGQVAAGSTDLSSRTEQQAASLEET 299 Query: 303 ASAMEEMTSTVRQNADNARQANQLAATASEVALQGGEIVGRVVTTMEEINQSSRKIVDII 362 A++M E+T TVR+NADNAR+A+ LA A+ VA G +GR+ TM +++ S KI DI Sbjct: 300 AASMTELTETVRRNADNAREASTLATAAASVATDGQAAIGRLNDTMHRMHEDSGKIADIT 359 Query: 363 GVIDGIAFQT 372 GVI+GIAFQT Sbjct: 360 GVIEGIAFQT 369 >RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 608 Score = 177 bits (450), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 94/174 (54%), Positives = 128/174 (73%), Gaps = 2/174 (1%) Query: 201 VAVLAAILLGYLMVRSIVKPLNEAVRVAENVAAGDLTTRIEPHSKDETGQLMAALRKMND 260 V ++ LL + + RSI PLN A+ AE++ GDLT I DETG+++ AL++M + Sbjct: 198 VGIVGGGLLTWSLRRSITVPLNRAIEQAEHITRGDLTHAIHVDRADETGRMLLALQRMQE 257 Query: 261 NLVDIVSGVRRSTDSIATASGEIASGNMDLSSRT--XAGSLEETASAMEEMTSTVRQNAD 318 +L +V VR +D+IA+A+ +IA+GN DLS RT A SLEETAS+ME++T V+QNAD Sbjct: 258 SLQGMVGQVRTGSDAIASATQQIAAGNADLSQRTEQQASSLEETASSMEQLTGMVKQNAD 317 Query: 319 NARQANQLAATASEVALQGGEIVGRVVTTMEEINQSSRKIVDIIGVIDGIAFQT 372 +ARQA+ LA AS++A++GGE+VGRVV TM I+ SSRKI DIIGVI+GIAFQT Sbjct: 318 SARQASTLAVNASDIAVKGGEVVGRVVETMAGIHDSSRKIADIIGVIEGIAFQT 371 >RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 524 Score = 177 bits (448), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 96/167 (57%), Positives = 126/167 (75%), Gaps = 6/167 (3%) Query: 212 LMVRSIVKPLNEAVRVAENVAAGDLTTRIEPHSK----DETGQLMAALRKMNDNLVDIVS 267 ++ R++V+PL A+ V E +AAGDL TR++ ++ DET +LM A+ M +L +V Sbjct: 213 VLGRTLVRPLERAIHVFERMAAGDLATRMDEPTRAGRRDETARLMHAVASMQSSLQKMVG 272 Query: 268 GVRRSTDSIATASGEIASGNMDLSSRT--XAGSLEETASAMEEMTSTVRQNADNARQANQ 325 VR +DSIA+A+ +IA+GN DLS RT A SLEETAS+MEE+TS V+QNADNARQA+ Sbjct: 273 QVRTGSDSIASATKQIAAGNADLSQRTEQQASSLEETASSMEELTSIVKQNADNARQAST 332 Query: 326 LAATASEVALQGGEIVGRVVTTMEEINQSSRKIVDIIGVIDGIAFQT 372 LA AS+VA++GGE+VGRVV TM IN SS+KI DIIGVI+GIAFQT Sbjct: 333 LAVNASDVAVKGGEVVGRVVETMAGINGSSKKIADIIGVIEGIAFQT 379 >RSc1950 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 329 Score = 174 bits (442), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 99/179 (55%), Positives = 125/179 (69%), Gaps = 2/179 (1%) Query: 196 LACSAVAVLAAILLGYLMVRSIVKPLNEAVRVAENVAAGDLTTRIEPHSKDETGQLMAAL 255 +A S AVL AI G L+ RSI +P+ +AV VAE VA GDL +RI+ DET +AAL Sbjct: 83 IALSIAAVLVAIGAGVLITRSITRPIGKAVNVAETVARGDLGSRIDAEGTDETSHRLAAL 142 Query: 256 RKMNDNLVDIVSGVRRSTDSIATASGEIASGNMDLSSRT--XAGSLEETASAMEEMTSTV 313 MN L IV VR S+ SIA A+ IA+GN DLS RT A SL+ETA+ MEE+TSTV Sbjct: 143 ADMNTRLTQIVDKVRDSSGSIAGAARPIAAGNADLSQRTEAQASSLQETAAGMEELTSTV 202 Query: 314 RQNADNARQANQLAATASEVALQGGEIVGRVVTTMEEINQSSRKIVDIIGVIDGIAFQT 372 +QNADNA+ A +LAATASEVA +G +V +VV+TM+ I+ S KI +I +I+GIAFQT Sbjct: 203 KQNADNAQHATELAATASEVAQKGNAVVSQVVSTMQAISDRSGKIAEITSIIEGIAFQT 261