BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0110.p         (142 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0437 [R] COG2391 Predicted transporter component Rso Ralstoni...   144   5e-35
XF0765 [R] COG2391 Predicted transporter component Xfa Xylella f...   124   9e-29
VCA0640 [R] COG2391 Predicted transporter component Vch Vibrio c...   123   1e-28
BMEII0808 [R] COG2391 Predicted transporter component Bme Brucel...   122   2e-28
SMa1052 [R] COG2391 Predicted transporter component Sme Sinorhiz...   114   5e-26

>RSc0437 [R] COG2391 Predicted transporter component Rso Ralstonia
           solanacearum
          Length = 137

 Score =  144 bits (364), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 83/131 (63%), Positives = 95/131 (72%)

Query: 7   LAALAAGLLFGLGLIVSGMADPAKVLGFLDLDGQWDPSLALVMGGAIAIGLPAFTLARKR 66
           L A AAGLLFG GL+VS MA PAKVLGFLDL G+WDPSLA VM GAI +G  AF +AR+R
Sbjct: 4   LIAWAAGLLFGAGLMVSCMASPAKVLGFLDLAGRWDPSLAFVMAGAILVGAIAFFIARRR 63

Query: 67  QWTLLGEPMQLPTARTIDRRLVLGSLLFGVGWGIAGICPGPALVLLGMASGKGLAFVLAM 126
             +LLG P++LP    I  RLVLGS  FG+GWG+AG CPGPALV LG  + K   FV AM
Sbjct: 64  GRSLLGLPVRLPAGAAITARLVLGSAAFGIGWGLAGFCPGPALVALGAGAPKAWGFVAAM 123

Query: 127 LAGMLLFRWSE 137
           LAGM +F   E
Sbjct: 124 LAGMAVFSAME 134


>XF0765 [R] COG2391 Predicted transporter component Xfa Xylella fastidiosa
           9a5c
          Length = 146

 Score =  124 bits (310), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 65/130 (50%), Positives = 85/130 (65%), Gaps = 1/130 (0%)

Query: 4   LRNLAALAAGLLFGLGLIVSGMADPAKVLGFLDL-DGQWDPSLALVMGGAIAIGLPAFTL 62
           LR   ALAAGLLFG GL +S M +P +VL FL++  G W+PSL  V+G A+A+  P   L
Sbjct: 7   LRFTVALAAGLLFGFGLALSEMINPIRVLSFLNVASGHWNPSLLFVLGSALAVAFPGMAL 66

Query: 63  ARKRQWTLLGEPMQLPTARTIDRRLVLGSLLFGVGWGIAGICPGPALVLLGMASGKGLAF 122
            R+ +  LL E   LP+ + IDRR+V GS +FG GWG+ G+CPGPA+  L    G  L F
Sbjct: 67  QRRLKRPLLDECFHLPSKKVIDRRIVFGSAIFGTGWGLTGLCPGPAIASLSTGLGPVLLF 126

Query: 123 VLAMLAGMLL 132
           V AM AGM++
Sbjct: 127 VAAMAAGMII 136


>VCA0640 [R] COG2391 Predicted transporter component Vch Vibrio cholerae
          Length = 154

 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 88/130 (67%), Gaps = 1/130 (0%)

Query: 2   RLLRNLAALAAGLLFGLGLIVSGMADPAKVLGFLDLDGQWDPSLALVMGGAIAIGLPA-F 60
           +LL    +L AGLLFGLG++VSGMADPAKV+GFLD+ G WDPSL  VMGGA+AI +PA F
Sbjct: 5   KLLFRATSLVAGLLFGLGMVVSGMADPAKVIGFLDVAGTWDPSLMFVMGGALAIFMPAYF 64

Query: 61  TLARKRQWTLLGEPMQLPTARTIDRRLVLGSLLFGVGWGIAGICPGPALVLLGMASGKGL 120
            L + +   +  E   L     IDRRL+ GS++FG+GWG+ GICPGP +  L + +    
Sbjct: 65  FLIKPKAKPVNAEVFCLANNTKIDRRLISGSVIFGLGWGLVGICPGPVVSSLALGNLGAW 124

Query: 121 AFVLAMLAGM 130
            F  AM+ G+
Sbjct: 125 VFFPAMMVGL 134


>BMEII0808 [R] COG2391 Predicted transporter component Bme Brucella melitensis
          Length = 218

 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 2/137 (1%)

Query: 1   MRLLRNLAALAAGLLFGLGLIVSGMADPAKVLGFLDL-DGQWDPSLALVMGGAIAIGLPA 59
           +  LR  AALAAG++FG GL +SGM +PA+V+GFL++  G WDPSLA VMGG + + +P 
Sbjct: 77  LSFLRLGAALAAGVIFGFGLSLSGMINPARVIGFLNIASGHWDPSLAFVMGGGLLVTIPG 136

Query: 60  FTLARKRQWTLLGEPMQLPTARTIDRRLVLGSLLFGVGWGIAGICPGPALVLLGMASGKG 119
             L R+           LPT   IDRRL+ GS LFG+GWG+ G CPGPA+  L +   + 
Sbjct: 137 IALCRRLSAPAFDTAFHLPTKTQIDRRLIAGSALFGIGWGLGGFCPGPAVAALSLGLPQV 196

Query: 120 LAFVLAMLAGMLLF-RW 135
             FVLAM  GM++  RW
Sbjct: 197 ALFVLAMAVGMIIHDRW 213


>SMa1052 [R] COG2391 Predicted transporter component Sme Sinorhizobium
           meliloti
          Length = 143

 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/139 (45%), Positives = 88/139 (63%), Gaps = 6/139 (4%)

Query: 5   RNL----AALAAGLLFGLGLIVSGMADPAKVLGFLDLDGQWDPSLALVMGGAIAIGLPAF 60
           RN+    AALA+G++FG GL +SGM +PA+V GFL++ G WDPSLA V+GGA+ +     
Sbjct: 3   RNICQFGAALASGIVFGFGLSLSGMLNPARVQGFLEVFGTWDPSLAFVLGGAVVVAFIGV 62

Query: 61  TLARKRQWTLLGEPMQLPTARTIDRRLVLGSLLFGVGWGIAGICPGPALVLLGMASGKGL 120
            + +  +     +   +PT R ID  LV+GS +FG+GWGI G CPGPA+  L +   + +
Sbjct: 63  QVMKLMRHPAFDDTFHVPTIRRIDAPLVIGSAVFGLGWGIGGFCPGPAVASLALGLPQTV 122

Query: 121 AFVLAMLAGMLLFR--WSE 137
            FV+AML GM L    WS 
Sbjct: 123 LFVVAMLVGMTLHDRLWSR 141