BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0106.p         (212 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC1580 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae       99   8e-21

>VC1580 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae
          Length = 303

 Score = 98.6 bits (244), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 92/162 (56%), Gaps = 6/162 (3%)

Query: 1   MLSDPSVSLTLESGLLEGLLERLMQHQLDVVLANETVPSDPDRPLHCRFLGSQAVSVVGP 60
           +L    V L L S  LE LL +L  H+LD++L+N  VPSD  +P  C+ +  Q+V +VGP
Sbjct: 129 VLGKSDVRLILSSSTLEDLLGQLQMHKLDLILSNRPVPSDSTQPWRCKRIAQQSVCLVGP 188

Query: 61  AHRWEARSLRIPQDLEGVDMALPGPRHALRMQFDALCISNDVRPRMRAEVDDMAMLRLIA 120
                 R  + PQDL  V   +PG    +R+QFD  C    +     AEVDDMAMLRL+A
Sbjct: 189 PSD-TLRRYQFPQDLPKVKTLVPGASSEIRLQFDLYCEQLGLAVTPYAEVDDMAMLRLLA 247

Query: 121 RDSGWLTVLPEVVVQDELRNGALVVAGQTTDPTLPARPASWW 162
           RD   +TV+PEVVVQDE+  G L   G     TL A   S++
Sbjct: 248 RDVEGVTVVPEVVVQDEIETGRLCNYG-----TLDAVTESFY 284