BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0105.p         (125 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC1580 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae      125   3e-29
YPO0471 [K] COG0583 Transcriptional regulator Ype Yersinia pestis      84   6e-17
nhaR [K] COG0583 Transcriptional regulator Eco Escherichia coli K12    83   1e-16
ZnhaR [K] COG0583 Transcriptional regulator EcZ Escherichia coli...    83   1e-16
ECs0018 [K] COG0583 Transcriptional regulator Ecs Escherichia co...    83   1e-16

>VC1580 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae
          Length = 303

 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/106 (61%), Positives = 79/106 (74%), Gaps = 1/106 (0%)

Query: 3   LEQLNFHHLRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFIREGRRLTL 62
           +  LNFHHL YFW VAK GHLTRAA++L+ SQSA+S+QIRQLE QL  DLF+R+GR L L
Sbjct: 14  MRHLNFHHLHYFWTVAKEGHLTRAAQQLNVSQSALSSQIRQLEGQLGHDLFVRQGRSLQL 73

Query: 63  TDTGQLVFTYADNIFGLSQELLGRLE-GRSAGVTRLRVGSVATGXR 107
           T+ G LV  YA++IF LS ELL  +E G    V +LR+GSVAT  R
Sbjct: 74  TEVGHLVLEYAESIFNLSGELLSIMESGELQRVQQLRIGSVATLSR 119


>YPO0471 [K] COG0583 Transcriptional regulator Ype Yersinia pestis
          Length = 299

 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%)

Query: 1   MRLEQLNFHHLRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFIREGRRL 60
           MR+  +NF+HL YFW+V K G +  AAE L  +   ++ QI+ LE +L   LF R GR L
Sbjct: 1   MRMSHINFNHLYYFWQVCKEGSVVGAAEALFLTPQTITGQIKALEGRLGGKLFKRRGRGL 60

Query: 61  TLTDTGQLVFTYADNIFGLSQELLGRLEGRSAGVTRLRVG 100
             ++ GQLVF YAD +F LSQE+L  +  R        VG
Sbjct: 61  VPSELGQLVFRYADKMFMLSQEMLDIVNYRKESHLLFDVG 100


>nhaR [K] COG0583 Transcriptional regulator Eco Escherichia coli K12
          Length = 301

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 61/100 (61%)

Query: 1   MRLEQLNFHHLRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFIREGRRL 60
           M +  +N++HL YFW V K G +  AAE L+ +   ++ QIR LE++L+  LF R+GR L
Sbjct: 1   MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGL 60

Query: 61  TLTDTGQLVFTYADNIFGLSQELLGRLEGRSAGVTRLRVG 100
             ++ G+LV+ YAD +F LSQE+L  +  R        VG
Sbjct: 61  EPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVG 100


>ZnhaR [K] COG0583 Transcriptional regulator EcZ Escherichia coli O157:H7
           EDL933
          Length = 301

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 61/100 (61%)

Query: 1   MRLEQLNFHHLRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFIREGRRL 60
           M +  +N++HL YFW V K G +  AAE L+ +   ++ QIR LE++L+  LF R+GR L
Sbjct: 1   MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGL 60

Query: 61  TLTDTGQLVFTYADNIFGLSQELLGRLEGRSAGVTRLRVG 100
             ++ G+LV+ YAD +F LSQE+L  +  R        VG
Sbjct: 61  EPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVG 100


>ECs0018 [K] COG0583 Transcriptional regulator Ecs Escherichia coli O157:H7
          Length = 301

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 61/100 (61%)

Query: 1   MRLEQLNFHHLRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFIREGRRL 60
           M +  +N++HL YFW V K G +  AAE L+ +   ++ QIR LE++L+  LF R+GR L
Sbjct: 1   MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGL 60

Query: 61  TLTDTGQLVFTYADNIFGLSQELLGRLEGRSAGVTRLRVG 100
             ++ G+LV+ YAD +F LSQE+L  +  R        VG
Sbjct: 61  EPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVG 100