BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0087.p (221 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3404 [TK] COG0745 Response regulators consisting of a CheY-li... 308 5e-84 RSp1554 [TK] COG0745 Response regulators consisting of a CheY-li... 238 9e-63 PA4776 [TK] COG0745 Response regulators consisting of a CheY-lik... 208 6e-54 PM0214 [TK] COG0745 Response regulators consisting of a CheY-lik... 205 6e-53 ygiX [TK] COG0745 Response regulators consisting of a CheY-like ... 196 3e-50 >RSc3404 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 221 Score = 308 bits (789), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 153/219 (69%), Positives = 189/219 (86%) Query: 1 MRVLLVEDDAMIGEAIQAALKDASYAVDWIKDGQIAITTITSQHYDIALLDLGLPGKDGL 60 MRVLL+EDD MIG ++AAL+DA+YAVDW++DG+ A+ QHYD+ LLDLGLPG+DG Sbjct: 1 MRVLLIEDDPMIGAVVEAALRDAAYAVDWVRDGRTAVDVSAHQHYDLLLLDLGLPGQDGH 60 Query: 61 DVLRSIRAKDIPIPLLIITARDGLDDRLQGLDGGADDYVLKPFQMAELLARMRAVLRRKG 120 VLR++RA+D P+P+LI+TARD +D+R++GLDGGADDYVLKPF+M ELLARMRAVLRR+G Sbjct: 61 AVLRTLRARDNPVPVLILTARDAVDERVRGLDGGADDYVLKPFEMVELLARMRAVLRRRG 120 Query: 121 GIASPLLTNGLLSLDPASKEASLRDGGSIQLSNREFALLQALLMRPGAILSRSELEDRIY 180 G ASP+L+NG+LSLDPA+ E DG ++LS REFALLQAL++RPGAILSR ELE+RIY Sbjct: 121 GAASPVLSNGVLSLDPATHEVRAGDGEPVRLSGREFALLQALMLRPGAILSRGELEERIY 180 Query: 181 GWNEEVESNAVEYLIHSLRRKLGGDIIKNVRGVGWMVSK 219 GW EV SNAVE+LIH+LR+KLG + IKNVRGVGWMVSK Sbjct: 181 GWGHEVASNAVEFLIHALRKKLGAESIKNVRGVGWMVSK 219 >RSp1554 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 246 Score = 238 bits (606), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 117/228 (51%), Positives = 166/228 (72%), Gaps = 10/228 (4%) Query: 1 MRVLLVEDDAMIGEAIQAALKDASYAVDWIKDGQIAITTITS---------QHYDIALLD 51 MRVLLVEDD MIGEA++ L+ +A+DW++DG+ A+ I + +D+ LLD Sbjct: 4 MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRDGEAAVQAIGAPGAASEAGGSMFDLMLLD 63 Query: 52 LGLPGKDGLDVLRSIRAKDIPIPLLIITARDGLDDRLQGLDGGADDYVLKPFQMAELLAR 111 LGLP +DGLDV+ +R + I +P+LI+TARD + DR+ GL+ GADDY++KPF + EL AR Sbjct: 64 LGLPKRDGLDVVHEVRRRGITLPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAAR 123 Query: 112 MRAVLRRKGGIASPLLTNGLLSLDPASKEASLRDGGSIQLSNREFALLQALLMRPGAILS 171 M A+LRR+GG A PL+ +G + L+P ++E LR G I+LS REFA+L ALL RPG + S Sbjct: 124 MHALLRRQGGRADPLMRHGEVLLNPVTREV-LRAGMPIKLSGREFAVLHALLSRPGKVWS 182 Query: 172 RSELEDRIYGWNEEVESNAVEYLIHSLRRKLGGDIIKNVRGVGWMVSK 219 ++L+D +YGW+EEV SN VE IH+LR+KLG I+N+RGVG+++ + Sbjct: 183 IAQLQDNLYGWDEEVGSNTVEVYIHALRKKLGSHFIQNIRGVGYVIPR 230 >PA4776 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 221 Score = 208 bits (530), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 102/219 (46%), Positives = 155/219 (70%), Gaps = 1/219 (0%) Query: 1 MRVLLVEDDAMIGEAIQAALKDASYAVDWIKDGQIAITTITSQHYDIALLDLGLPGKDGL 60 MR+LL EDD ++G+ I+A L+ V+W+ DG A + + +D+ +LD+GLP + GL Sbjct: 1 MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLVLDIGLPRRSGL 60 Query: 61 DVLRSIRAKDIPIPLLIITARDGLDDRLQGLDGGADDYVLKPFQMAELLARMRAVLRRKG 120 D+LR++R + + P+L++TARD + DR+ GLD GADDY+ KPF + EL AR+RA+ RR Sbjct: 61 DILRNLRHQGLLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRTT 120 Query: 121 GIASPLLTNGLLSLDPASKEASLRDGGSIQLSNREFALLQALLMRPGAILSRSELEDRIY 180 G A P L +G L LDPA+ + +L G +++L+ RE+ALL+ LL G +LSR++LE +Y Sbjct: 121 GRALPQLVHGELRLDPATHQVTL-SGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLY 179 Query: 181 GWNEEVESNAVEYLIHSLRRKLGGDIIKNVRGVGWMVSK 219 GW+ +VESNA+E +H LRRKLG +I+ VRG+G+ + + Sbjct: 180 GWSGDVESNAIEVHVHHLRRKLGNQLIRTVRGIGYGIDQ 218 >PM0214 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pmu Pasteurella multocida Length = 223 Score = 205 bits (522), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 95/219 (43%), Positives = 149/219 (68%), Gaps = 1/219 (0%) Query: 1 MRVLLVEDDAMIGEAIQAALKDASYAVDWIKDGQIAITTITSQHYDIALLDLGLPGKDGL 60 MR+LL+EDDA+IG +Q L + + VDW +DG+ + + S YD +LDL LP DGL Sbjct: 1 MRILLIEDDALIGNGLQIGLTKSGFLVDWFQDGKTGLEAVKSAPYDAVVLDLTLPKMDGL 60 Query: 61 DVLRSIRAKDIPIPLLIITARDGLDDRLQGLDGGADDYVLKPFQMAELLARMRAVLRRKG 120 D+L+ R + +P+LI+TARD LD+R+ GL GADDY+ KPF + E++AR++A++RR+ Sbjct: 61 DILQRWRKEKYDVPVLILTARDTLDERVMGLQKGADDYLCKPFALVEVIARLQALIRRRY 120 Query: 121 GIASPLLTNGLLSLDPASKEASLRDGGSIQLSNREFALLQALLMRPGAILSRSELEDRIY 180 G ASP++ + L+ DP ++ LR + L+ RE+ LL+ ++ +LSR +E+++Y Sbjct: 121 GQASPVIEHSLVCFDPNQRKVFLRQ-EEVALTTREYKLLELFMLNKDRVLSRRMIEEKLY 179 Query: 181 GWNEEVESNAVEYLIHSLRRKLGGDIIKNVRGVGWMVSK 219 W++EV SNA+E I++LR+KLG I+ V GVG+ + K Sbjct: 180 NWDDEVSSNALEVHIYNLRQKLGKQFIRTVHGVGYALGK 218 >ygiX [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 219 Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 101/219 (46%), Positives = 143/219 (65%), Gaps = 1/219 (0%) Query: 1 MRVLLVEDDAMIGEAIQAALKDASYAVDWIKDGQIAITTITSQHYDIALLDLGLPGKDGL 60 MR+LL+EDD +IG+ I+ L ++VDW G+ + S YD +LDL LPG DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 DVLRSIRAKDIPIPLLIITARDGLDDRLQGLDGGADDYVLKPFQMAELLARMRAVLRRKG 120 D+LR R K P+LI+TARD L +R++GL GADDY+ KPF + E+ AR+ A++RR Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GIASPLLTNGLLSLDPASKEASLRDGGSIQLSNREFALLQALLMRPGAILSRSELEDRIY 180 G AS L +G + LDP + A+L G + L +EFALL+ L+ G +LSR +E+++Y Sbjct: 121 GQASNELRHGNVMLDPGKRIATL-AGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 Query: 181 GWNEEVESNAVEYLIHSLRRKLGGDIIKNVRGVGWMVSK 219 W+EEV SNAVE +H LRRKLG D I+ V G+G+ + + Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218