BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0078.p (227 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0655 [TK] COG0745 Response regulators consisting of a CheY-li... 342 3e-94 ylcA [TK] COG0745 Response regulators consisting of a CheY-like ... 311 6e-85 ZylcA [TK] COG0745 Response regulators consisting of a CheY-like... 311 6e-85 ECs0609 [TK] COG0745 Response regulators consisting of a CheY-li... 311 6e-85 PA2809 [TK] COG0745 Response regulators consisting of a CheY-lik... 294 1e-79 >RSp0655 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 228 Score = 342 bits (878), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 171/221 (77%), Positives = 195/221 (88%) Query: 1 VVEDEPKTGEYIQRGLTEAGFVVDLAKNGLDGYHLAMTEPYDLVVLDVMLPDVDGWRIVQ 60 VVEDE KTGEY+Q+GLTEAGFVVDLA+NG+DG HLA YDL+VLDVMLPD+DGW++VQ Sbjct: 5 VVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATMGDYDLLVLDVMLPDLDGWQVVQ 64 Query: 61 SLRDAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGSNVVL 120 SLR A VPVLFLTARDSV DRVKGLE+GADDYLVKPFAF+ELLARVRTLLRRGS V Sbjct: 65 SLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGSTPVA 124 Query: 121 QDRLTVADLVLDLPRRSASRGGRKLVLTSKEFALLEFLARRRGEVLPRSLIASQIWDINF 180 DR+ +ADLVLDL RR ASR G+++ LTSKEFALLE LARRRGEVLPRSLIASQ+WD+NF Sbjct: 125 LDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVWDMNF 184 Query: 181 NSDSNVIDVAIRRLRAKVDDGFEHKLILTVRGVGYILDDAD 221 +SD+NVIDVAIRRLRAK+DD F KLI TVRG+GY+L+D + Sbjct: 185 DSDTNVIDVAIRRLRAKIDDDFTPKLIQTVRGMGYVLEDPE 225 >ylcA [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 227 Score = 311 bits (798), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 148/222 (66%), Positives = 184/222 (82%) Query: 1 VVEDEPKTGEYIQRGLTEAGFVVDLAKNGLDGYHLAMTEPYDLVVLDVMLPDVDGWRIVQ 60 +VEDE KTGEY+ +GLTEAGFVVDLA NGL+GYHLAMT YDL++LD+MLPDV+GW IV+ Sbjct: 5 IVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVR 64 Query: 61 SLRDAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGSNVVL 120 LR A K +P+L LTA ++ RVKGLE+GADDYLVKPFAF+ELLARVRTLLRRG+ V++ Sbjct: 65 MLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAVII 124 Query: 121 QDRLTVADLVLDLPRRSASRGGRKLVLTSKEFALLEFLARRRGEVLPRSLIASQIWDINF 180 + + VADL++DL R +R G ++ LTSKEF LLEF R +GEVLPRSLIASQ+WD+NF Sbjct: 125 ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDMNF 184 Query: 181 NSDSNVIDVAIRRLRAKVDDGFEHKLILTVRGVGYILDDADA 222 +SD+N IDVA++RLR K+D+ FE KLI TVRGVGY+L+ D Sbjct: 185 DSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 >ZylcA [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain EcZ Escherichia coli O157:H7 EDL933 Length = 227 Score = 311 bits (798), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 148/222 (66%), Positives = 184/222 (82%) Query: 1 VVEDEPKTGEYIQRGLTEAGFVVDLAKNGLDGYHLAMTEPYDLVVLDVMLPDVDGWRIVQ 60 +VEDE KTGEY+ +GLTEAGFVVDLA NGL+GYHLAMT YDL++LD+MLPDV+GW IV+ Sbjct: 5 IVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVR 64 Query: 61 SLRDAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGSNVVL 120 LR A K +P+L LTA ++ RVKGLE+GADDYLVKPFAF+ELLARVRTLLRRG+ V++ Sbjct: 65 MLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAVII 124 Query: 121 QDRLTVADLVLDLPRRSASRGGRKLVLTSKEFALLEFLARRRGEVLPRSLIASQIWDINF 180 + + VADL++DL R +R G ++ LTSKEF LLEF R +GEVLPRSLIASQ+WD+NF Sbjct: 125 ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDMNF 184 Query: 181 NSDSNVIDVAIRRLRAKVDDGFEHKLILTVRGVGYILDDADA 222 +SD+N IDVA++RLR K+D+ FE KLI TVRGVGY+L+ D Sbjct: 185 DSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 >ECs0609 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ecs Escherichia coli O157:H7 Length = 227 Score = 311 bits (798), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 148/222 (66%), Positives = 184/222 (82%) Query: 1 VVEDEPKTGEYIQRGLTEAGFVVDLAKNGLDGYHLAMTEPYDLVVLDVMLPDVDGWRIVQ 60 +VEDE KTGEY+ +GLTEAGFVVDLA NGL+GYHLAMT YDL++LD+MLPDV+GW IV+ Sbjct: 5 IVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVR 64 Query: 61 SLRDAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGSNVVL 120 LR A K +P+L LTA ++ RVKGLE+GADDYLVKPFAF+ELLARVRTLLRRG+ V++ Sbjct: 65 MLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAVII 124 Query: 121 QDRLTVADLVLDLPRRSASRGGRKLVLTSKEFALLEFLARRRGEVLPRSLIASQIWDINF 180 + + VADL++DL R +R G ++ LTSKEF LLEF R +GEVLPRSLIASQ+WD+NF Sbjct: 125 ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDMNF 184 Query: 181 NSDSNVIDVAIRRLRAKVDDGFEHKLILTVRGVGYILDDADA 222 +SD+N IDVA++RLR K+D+ FE KLI TVRGVGY+L+ D Sbjct: 185 DSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 >PA2809 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 226 Score = 294 bits (752), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 146/221 (66%), Positives = 183/221 (82%) Query: 1 VVEDEPKTGEYIQRGLTEAGFVVDLAKNGLDGYHLAMTEPYDLVVLDVMLPDVDGWRIVQ 60 +VEDEP+ G+Y+++GL EAGF VDL+ +G +G LA+ YDL++LDVMLP DGW+I++ Sbjct: 5 IVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGWQILR 64 Query: 61 SLRDAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGSNVVL 120 S+RDA TVPVLFLTARD+V DRV+GLE GADDYLVKPFAF ELLARVRTLLRRGS + Sbjct: 65 SVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGSQQLQ 124 Query: 121 QDRLTVADLVLDLPRRSASRGGRKLVLTSKEFALLEFLARRRGEVLPRSLIASQIWDINF 180 + L +ADL LDL RR R G+++ LT+KEFALLE L RR GEVLP+SLIASQ+WD+NF Sbjct: 125 ETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVWDMNF 184 Query: 181 NSDSNVIDVAIRRLRAKVDDGFEHKLILTVRGVGYILDDAD 221 +SD+NVI+VAIRRLRAKVDD + +LI TVRG+GY+L++ D Sbjct: 185 DSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLEERD 225