BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0068.p         (109 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1261 [C] COG1145 Ferredoxin Sty Salmonella typhimurium LT2         123   8e-29
BS_yhjQ [C] COG1145 Ferredoxin Bsu Bacillus subtilis                   91   5e-19
CAC0075 [C] COG1145 Ferredoxin Cac Clostridium acetobutylicum          83   1e-16
RSp0321 [C] COG1145 Ferredoxin Rso Ralstonia solanacearum              75   3e-14
alr7634 [C] COG1145 Ferredoxin Nos Nostoc sp. PCC 7120                 65   4e-11

>STM1261 [C] COG1145 Ferredoxin Sty Salmonella typhimurium LT2
          Length = 108

 Score =  123 bits (309), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 64/106 (60%), Positives = 84/106 (79%)

Query: 3   REEFRACIEACYACAAACDQCAAACLKEEDVKMMARCIATDTDCADICRTAAALMARSSE 62
           ++E R CIE CY CAAACD CA++CL+E++V+MM  CI  D  CA ICR AA  MA  SE
Sbjct: 2   QQEHRECIEQCYECAAACDICASSCLREDNVEMMKHCIQLDMQCAAICRLAAQFMALESE 61

Query: 63  FAQQVCKLCAQICKACAEECAKHKAEHCQVCAQACTRCAEACSQMA 108
           ++Q++C+LCA ICKACAEECA+H  +HCQ CA+AC++CA+AC +MA
Sbjct: 62  YSQKLCRLCADICKACAEECARHDHDHCQNCARACSQCADACLKMA 107


>BS_yhjQ [C] COG1145 Ferredoxin Bsu Bacillus subtilis
          Length = 108

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 61/102 (59%)

Query: 7   RACIEACYACAAACDQCAAACLKEEDVKMMARCIATDTDCADICRTAAALMARSSEFAQQ 66
            ACIEAC  C  AC+ C   CL+E     ++ CI  D +CADIC  A   M   S F ++
Sbjct: 6   EACIEACIDCMKACNHCFTKCLEESVQHHLSGCIRLDRECADICALAVKAMQTDSPFMKE 65

Query: 67  VCKLCAQICKACAEECAKHKAEHCQVCAQACTRCAEACSQMA 108
           +C LCA IC+AC  EC KH  +HCQ CA+AC  CAE C  MA
Sbjct: 66  ICALCADICEACGTECGKHDHDHCQACAKACFTCAEQCRSMA 107


>CAC0075 [C] COG1145 Ferredoxin Cac Clostridium acetobutylicum
          Length = 115

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 66/108 (61%)

Query: 1   MSREEFRACIEACYACAAACDQCAAACLKEEDVKMMARCIATDTDCADICRTAAALMARS 60
           M  ++++ CI+AC  C+ AC +C  ACL E DV     CI+   +CA +C+ ++ALM+  
Sbjct: 6   MVTDKYQKCIDACNRCSQACYECFKACLNEPDVNARRTCISILFECAQMCQMSSALMSMD 65

Query: 61  SEFAQQVCKLCAQICKACAEECAKHKAEHCQVCAQACTRCAEACSQMA 108
           ++FA   CKLC+ IC  CA+EC+  +  HCQ CA  C  C+  C  M+
Sbjct: 66  AQFAIDHCKLCSVICDKCAQECSMFQDPHCQKCANECRTCSNECRMMS 113


>RSp0321 [C] COG1145 Ferredoxin Rso Ralstonia solanacearum
          Length = 133

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 62/103 (60%)

Query: 6   FRACIEACYACAAACDQCAAACLKEEDVKMMARCIATDTDCADICRTAAALMARSSEFAQ 65
           F + I+A +AC  AC  CA  C K    + M RC++  TDCA  C  A   + R+SEFA+
Sbjct: 14  FASVIQALHACETACAYCATECGKNGHAEAMGRCVSLCTDCARFCALARDFLERNSEFAE 73

Query: 66  QVCKLCAQICKACAEECAKHKAEHCQVCAQACTRCAEACSQMA 108
            + + CA+IC+   EEC  H   HC+ CA+AC +C +AC ++A
Sbjct: 74  LLLEDCAEICQQTMEECVHHAEGHCRKCAEACEQCKKACLEVA 116


>alr7634 [C] COG1145 Ferredoxin Nos Nostoc sp. PCC 7120
          Length = 122

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 1/108 (0%)

Query: 3   REEFRACIEACYACAAACDQCAAACLKEEDVKMMARCIATDTDCADICRTAAALMARSSE 62
            ++ + CI+ C  C + C      CL++         I    DCA+IC T+A  M R+S+
Sbjct: 12  NQQMQQCIQNCLDCHSICLNTVTYCLQKGGHHAKPAHIRLMLDCAEICNTSANFMLRASD 71

Query: 63  FAQQVCKLCAQICKACAEECAKHKAE-HCQVCAQACTRCAEACSQMAV 109
              + C +CA++C+ CA+EC  +  +   + CAQ C RCA++C QMA+
Sbjct: 72  LHSRTCGVCAELCQRCADECDAYGDDAQMKACAQMCRRCADSCRQMAM 119