BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0065.p (223 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0489 [TK] COG0745 Response regulators consisting of a CheY-li... 317 2e-86 PA4885 [TK] COG0745 Response regulators consisting of a CheY-lik... 283 2e-76 RSp0655 [TK] COG0745 Response regulators consisting of a CheY-li... 281 1e-75 PA2809 [TK] COG0745 Response regulators consisting of a CheY-lik... 276 3e-74 ylcA [TK] COG0745 Response regulators consisting of a CheY-like ... 262 4e-70 >RSp0489 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 224 Score = 317 bits (811), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 154/221 (69%), Positives = 187/221 (84%) Query: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQSGVDGLHNARTLEYKLIILDVMLPGMNGW 60 M +L+VEDEPK+GDYL +GLTESGFV D +SG DGL+ A +Y LI+LDVMLPGM+GW Sbjct: 1 MRLLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGMDGW 60 Query: 61 DILRELRRTHDTPVLFLTARDEIEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRGPS 120 ++RELRR TPVLFLTARDE+ DR+KGLELGADDYLVKPFAF EL+ARV T+LRRGP Sbjct: 61 QVIRELRRRKTTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILRRGPM 120 Query: 121 RESDVIEYAGVQLEVLRRKVTRDGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWDM 180 RES+V+E A + ++ ++R+VTR G+RIDLTAKE+ALLH+L RR GEVLSR I+SQVWD+ Sbjct: 121 RESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQVWDV 180 Query: 181 NFDSDTNVVDVAVRRLRAKLDDGFEGKLLHTAWGMGYVFEA 221 NFDS+TNVVDVA+RRLRAK+DD FE KL+HT GMGYV + Sbjct: 181 NFDSNTNVVDVAIRRLRAKVDDPFEHKLIHTLRGMGYVLDT 221 >PA4885 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 229 Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 146/222 (65%), Positives = 184/222 (82%) Query: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQSGVDGLHNARTLEYKLIILDVMLPGMNGW 60 M IL++ED+ K+G+YL++GL ESG+ VDW Q G DGL+ A Y L++LDVMLPG++GW Sbjct: 1 MRILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVMLPGLDGW 60 Query: 61 DILRELRRTHDTPVLFLTARDEIEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRGPS 120 I+ LR+ HD PVLFLTARD+++DR++GLELGADDYLVKPF+FTELL R+RTLLRRG Sbjct: 61 QIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVV 120 Query: 121 RESDVIEYAGVQLEVLRRKVTRDGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWDM 180 RE++ ++ A +QL+VLRRKV+R GQ I LT KEFALLH+L+RR GEVLSR IAS+VWDM Sbjct: 121 REAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWDM 180 Query: 181 NFDSDTNVVDVAVRRLRAKLDDGFEGKLLHTAWGMGYVFEAR 222 NFDSDTNVVDVA++RLRAK+D+ F KL+HT G+GYV E R Sbjct: 181 NFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCEER 222 >RSp0655 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 228 Score = 281 bits (718), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 144/222 (64%), Positives = 176/222 (79%), Gaps = 2/222 (0%) Query: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQSGVDGLHNARTLEYKLIILDVMLPGMNGW 60 M +L+VEDE K+G+YL++GLTE+GFVVD ++GVDGLH A +Y L++LDVMLP ++GW Sbjct: 1 MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATMGDYDLLVLDVMLPDLDGW 60 Query: 61 DILRELRRT-HDTPVLFLTARDEIEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRGP 119 +++ LR PVLFLTARD + DRVKGLELGADDYLVKPFAF ELLARVRTLLRRG Sbjct: 61 QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 120 SRES-DVIEYAGVQLEVLRRKVTRDGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVW 178 + + D I+ A + L++ RR+ +R GQRI LT+KEFALL +L RR GEVL R IASQVW Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 179 DMNFDSDTNVVDVAVRRLRAKLDDGFEGKLLHTAWGMGYVFE 220 DMNFDSDTNV+DVA+RRLRAK+DD F KL+ T GMGYV E Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFTPKLIQTVRGMGYVLE 222 >PA2809 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 226 Score = 276 bits (705), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 142/225 (63%), Positives = 175/225 (77%), Gaps = 2/225 (0%) Query: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQSGVDGLHNARTLEYKLIILDVMLPGMNGW 60 M +L+VEDEP+ G YLR+GL E+GF VD G +G A +Y L+ILDVMLPG +GW Sbjct: 1 MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 60 Query: 61 DILRELRRTHDT-PVLFLTARDEIEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRGP 119 ILR +R T PVLFLTARD +EDRV+GLE GADDYLVKPFAF ELLARVRTLLRRG Sbjct: 61 QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120 Query: 120 SR-ESDVIEYAGVQLEVLRRKVTRDGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVW 178 + + ++ A ++L++LRR+V R G+RIDLTAKEFALL +L+RR GEVL + IASQVW Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180 Query: 179 DMNFDSDTNVVDVAVRRLRAKLDDGFEGKLLHTAWGMGYVFEARN 223 DMNFDSDTNV++VA+RRLRAK+DD + +L+HT GMGYV E R+ Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLEERD 225 >ylcA [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 227 Score = 262 bits (670), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 137/223 (61%), Positives = 168/223 (75%), Gaps = 4/223 (1%) Query: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQSGVDGLHNARTLEYKLIILDVMLPGMNGW 60 M +L+VEDE K+G+YL +GLTE+GFVVD +G++G H A T +Y LIILD+MLP +NGW Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 DILRELRRTHD-TPVLFLTARDEIEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRGP 119 DI+R LR + P+L LTA IE RVKGLELGADDYLVKPFAF ELLARVRTLLRRG Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 SR--ESDVIEYAGVQLEVLRRKVTRDGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQV 177 + ES + A + ++++ RKVTR G RI LT+KEF LL +R GEVL R IASQV Sbjct: 121 AVIIESQ-FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 Query: 178 WDMNFDSDTNVVDVAVRRLRAKLDDGFEGKLLHTAWGMGYVFE 220 WDMNFDSDTN +DVAV+RLR K+D+ FE KL+ T G+GY+ E Sbjct: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222