BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0055.p         (172 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0070 [J] COG0242 N-formylmethionyl-tRNA deformylase Rso Ralst...   257   1e-68
PA0019 [J] COG0242 N-formylmethionyl-tRNA deformylase Pae Pseudo...   204   1e-52
NMB0110 [J] COG0242 N-formylmethionyl-tRNA deformylase Nme Neiss...   204   1e-52
NMA0164 [J] COG0242 N-formylmethionyl-tRNA deformylase NmA Neiss...   204   1e-52
YPO0242 [J] COG0242 N-formylmethionyl-tRNA deformylase Ype Yersi...   186   2e-47

>RSc0070 [J] COG0242 N-formylmethionyl-tRNA deformylase Rso Ralstonia
           solanacearum
          Length = 169

 Score =  257 bits (656), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/166 (73%), Positives = 144/166 (86%)

Query: 1   MALLNILRYPDPRLHKVAVPVTVFDERIKKLVADMAETMYAAPGVGLAASQVDVHEQVVV 60
           MALLNIL+YPDPRLHKVA PV V D+RI+KLVADMAETMY APG+GLAA+QVDVHE+V+ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60

Query: 61  IDVSDEGKNLQVFINPEILWASEEKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
           IDVS+    L+VFINPEI+WASE ++V+DEGCLSVP IYD VERP RV+VRA +  G++F
Sbjct: 61  IDVSESRDELRVFINPEIVWASEARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESF 120

Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERE 166
           E++ D LLAVCIQHEMDHL GKVFVEYLSPLK+NRIK KL+K + E
Sbjct: 121 ELETDGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQLE 166


>PA0019 [J] COG0242 N-formylmethionyl-tRNA deformylase Pae Pseudomonas
           aeruginosa
          Length = 168

 Score =  204 bits (518), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/166 (56%), Positives = 129/166 (77%)

Query: 1   MALLNILRYPDPRLHKVAVPVTVFDERIKKLVADMAETMYAAPGVGLAASQVDVHEQVVV 60
           MA+LNIL +PDPRL  +A PV V D+ +++L+ DM ETMY APG+GLAA+QV+VH+++VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDVSDEGKNLQVFINPEILWASEEKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
           +D+S++    +VFINPE    +E+   Y EGCLSVPG Y+ V+RP +V+++A D DG  F
Sbjct: 61  MDLSEDKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120

Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERE 166
           E  A+ LLAVCIQHE DHL GK+FV+YLS LKR+RI+ KL+K+ R+
Sbjct: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166


>NMB0110 [J] COG0242 N-formylmethionyl-tRNA deformylase Nme Neisseria
           meningitidis MC58
          Length = 167

 Score =  204 bits (518), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/165 (61%), Positives = 127/165 (76%), Gaps = 1/165 (0%)

Query: 1   MALLNILRYPDPRLHKVAVPVTVFDERIKKLVADMAETMYAAPGVGLAASQVDVHEQVVV 60
           MALLNIL+YPD RLH VA PV   DERI+KL+ADM ETMY + G+GLAA+QVDVHE+VVV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 60

Query: 61  IDVSDEGKNLQVFINPEILWASEEKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
           +D++++    +VFINP I+    E   Y+EGCLSVPGIYD V R  RVKV A +  G+ F
Sbjct: 61  MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119

Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEER 165
            ++AD LLA+C+QHE+DHL G VFVE LS LK+ RIKTKL+K ++
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>NMA0164 [J] COG0242 N-formylmethionyl-tRNA deformylase NmA Neisseria
           meningitidis Z2491
          Length = 167

 Score =  204 bits (518), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/165 (61%), Positives = 127/165 (76%), Gaps = 1/165 (0%)

Query: 1   MALLNILRYPDPRLHKVAVPVTVFDERIKKLVADMAETMYAAPGVGLAASQVDVHEQVVV 60
           MALLNIL+YPD RLH VA PV   DERI+KL+ADM ETMY + G+GLAA+QVDVHE+VVV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 60

Query: 61  IDVSDEGKNLQVFINPEILWASEEKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
           +D++++    +VFINP I+    E   Y+EGCLSVPGIYD V R  RVKV A +  G+ F
Sbjct: 61  MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119

Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEER 165
            ++AD LLA+C+QHE+DHL G VFVE LS LK+ RIKTKL+K ++
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>YPO0242 [J] COG0242 N-formylmethionyl-tRNA deformylase Ype Yersinia pestis
          Length = 170

 Score =  186 bits (473), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/162 (56%), Positives = 119/162 (73%), Gaps = 1/162 (0%)

Query: 1   MALLNILRYPDPRLHKVAVPVTVFDERIKKLVADMAETMYAAPGVGLAASQVDVHEQVVV 60
           M++L +L YPD RL K+A PV   +  I+++V DM ETMYA  G+GLAA+QVDVH+Q++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60

Query: 61  IDVSDEGKNLQVFINPEILWASEEKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
           ID+S+      V INPE+L  S E  + +EGCLS+P     V R  +VK+RA D DGK F
Sbjct: 61  IDISENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119

Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQK 162
           E++ D LLA+CIQHEMDHL GK+FV+YLSPLKR RI+ KL+K
Sbjct: 120 ELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEK 161