BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0052.p         (102 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0280 [K] COG0789 Predicted transcriptional regulators Rso Ral...   118   3e-27
SMc01260 [K] COG0789 Predicted transcriptional regulators Sme Si...    69   2e-12
PA2016 [K] COG0789 Predicted transcriptional regulators Pae Pseu...    66   2e-11
mll1317 [K] COG0789 Predicted transcriptional regulators Mlo Mes...    65   4e-11
CC0081 [K] COG0789 Predicted transcriptional regulators Ccr Caul...    64   8e-11

>RSc0280 [K] COG0789 Predicted transcriptional regulators Rso Ralstonia
           solanacearum
          Length = 165

 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/91 (64%), Positives = 70/91 (76%)

Query: 2   GGRHRVYPARERTRLKLTLRGKRLGFTLAEIKDLIDMYESPKDTQPQLQRFLGLLQQHRE 61
           GGR RVY ARERTRLKLTLRGKRLG +L EIK+++D+YESP+DT PQL+R L  L QHR 
Sbjct: 62  GGRRRVYSARERTRLKLTLRGKRLGLSLGEIKEILDLYESPRDTVPQLERLLTFLAQHRA 121

Query: 62  KLEQQREDLELTLSEIAAHEEECRQLLADAK 92
            L QQ EDL   L+EI  HE +CR LL +A+
Sbjct: 122 VLTQQLEDLNAQLAEIDQHETQCRHLLDEAR 152


>SMc01260 [K] COG0789 Predicted transcriptional regulators Sme Sinorhizobium
           meliloti
          Length = 128

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 58/88 (65%)

Query: 3   GRHRVYPARERTRLKLTLRGKRLGFTLAEIKDLIDMYESPKDTQPQLQRFLGLLQQHREK 62
           GR R++   +R  +K  LRG+R+GFT+AEI+++I +Y+ P     QLQ  +  +++ RE 
Sbjct: 36  GRTRLFRPADRHLIKEILRGRRIGFTIAEIREIIQVYKDPPGEMGQLQLLIKRVEEKRED 95

Query: 63  LEQQREDLELTLSEIAAHEEECRQLLAD 90
           L Q+R+D+E TLSE+   EE C   LA+
Sbjct: 96  LRQKRKDIEDTLSELDNVEEACLTRLAE 123


>PA2016 [K] COG0789 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 134

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 2/94 (2%)

Query: 3   GRHRVYPARERTRLKLTLRGKRLGFTLAEIKDLIDMY--ESPKDTQPQLQRFLGLLQQHR 60
           G+ R+Y  R++  LKL LRGKR+GF+LAE ++LI++Y  +     Q QL   L  + + R
Sbjct: 36  GQERIYSPRDKVSLKLILRGKRIGFSLAECRELIELYDPDPSSGNQKQLNTMLEKIAERR 95

Query: 61  EKLEQQREDLELTLSEIAAHEEECRQLLADAKPK 94
            +LEQQ  D+E    E+   EE CR  L  +  K
Sbjct: 96  AQLEQQLLDIEQMQLELDTAEERCRAALIKSYNK 129


>mll1317 [K] COG0789 Predicted transcriptional regulators Mlo Mesorhizobium
           loti
          Length = 128

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 56/88 (63%)

Query: 3   GRHRVYPARERTRLKLTLRGKRLGFTLAEIKDLIDMYESPKDTQPQLQRFLGLLQQHREK 62
           GR R++   +R  ++  +RGKRLGF++ EI+++I MY+ P     QL+  +  +++ RE 
Sbjct: 36  GRTRLFRPSDRHLIRQIMRGKRLGFSINEIREIIQMYKEPPGEVGQLKLMIKRIEEKRED 95

Query: 63  LEQQREDLELTLSEIAAHEEECRQLLAD 90
           L Q+R DLE TL+E+   EE C + L +
Sbjct: 96  LRQKRRDLEETLAELDQAEESCVERLVE 123


>CC0081 [K] COG0789 Predicted transcriptional regulators Ccr Caulobacter
           vibrioides
          Length = 159

 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 6/96 (6%)

Query: 3   GRHRVYPARERTRLKLTLRGKRLGFTLAEIKDLIDMYESPKDTQPQLQRFLGLLQQHREK 62
           G +RVY  ++R RL+L LRGKR+G +L EI++L+D+Y+   +   Q+ R L   ++    
Sbjct: 42  GLNRVYSHKDRVRLQLILRGKRVGLSLTEIRELLDLYDENDEGAAQMARSLKKFRERATA 101

Query: 63  LEQQREDLELTLSEIAAHEEECRQL---LADAKPKI 95
           LEQQR+D++  L E+    E C +L   L + +P +
Sbjct: 102 LEQQRDDIDNALIEL---REACNRLERRLTEIRPDL 134