BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0018.p (538 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2040 [E] COG0559 Branched-chain amino acid ABC-type transport... 462 e-130 SMb20604 [E] COG0559 Branched-chain amino acid ABC-type transpor... 441 e-123 YPO1188 [E] COG0559 Branched-chain amino acid ABC-type transport... 434 e-121 AGc4379 [E] COG0559 Branched-chain amino acid ABC-type transport... 432 e-120 PA4859 [E] COG0559 Branched-chain amino acid ABC-type transport ... 376 e-104 >RSc2040 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Rso Ralstonia solanacearum Length = 538 Score = 462 bits (1189), Expect = e-130, Method: Compositional matrix adjust. Identities = 281/508 (55%), Positives = 347/508 (68%), Gaps = 7/508 (1%) Query: 32 LKPLGGDDPDARIDAVNQIAALANDDALKILNALNSDALYVTPAGDVLIVDDAGKAFNPA 91 LKPL DD DA++ +N +AA + A IL AL +DAL+ PA +L + + + Sbjct: 36 LKPLAEDDFDAKVKVLNALAAAPAEQAGPILRALQNDALFYAPAAGML-RQEGERYLDAI 94 Query: 92 TDQ-TGPAPDDAEGITVNNRLRGAVDGALSGLKLLSPQRDQRLAAAGELLKNADPAQIPL 150 + Q DD + +T+NN LR VD A SG L SP R R A LL + + A + Sbjct: 95 SGQPVAMKADDLQALTLNNALRAQVDSAASGFVLQSPDRAVRAQAIDTLLAHPETASRTV 154 Query: 151 IEKALAKESDPQIKDVLQQVQATANLHSTDPAARRAAVKKLAETTNASLKPVLENMLAKN 210 ++ A +E+DP+++ L + A L PA + A++ LA TN + + +LAK+ Sbjct: 155 VDAARKQETDPELRTRLHLLWANLALDDGSPAEKLEALRLLAGDTNPQTRQRIAPLLAKD 214 Query: 211 PDGSYVEADEGVRIEAVRTLSALDRHLAIVDFAGKLFYGVSLGSVLLLAALGLAITFGLM 270 AD+ +R A + L L + G LF G+SLGSVLLLAALGLAIT+GL+ Sbjct: 215 SG-----ADDVLRAAARQALDNLAAQARKAELIGNLFAGLSLGSVLLLAALGLAITYGLI 269 Query: 271 GIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYLVVALPAAFIVAAAVGIALERLVI 330 G+INMAHGE LMIGAY TYV Q +FR FP A D YL ALPAAF+ AA VG LER+V+ Sbjct: 270 GVINMAHGEFLMIGAYATYVVQTLFRNHFPAAFDWYLPAALPAAFLAAAVVGFVLERMVL 329 Query: 331 RWLYGRPLETLLCTWGISLMLMQGVRSIFGAQNVEVANPSWMSGGVTVLGSLVLSYNRIV 390 R LYGRPLETLL T+G+SL+LMQ VRS+FGAQNVEVANPSWMSGG+ + L+L YNR+V Sbjct: 330 RHLYGRPLETLLATFGVSLLLMQAVRSVFGAQNVEVANPSWMSGGIALYPGLILPYNRLV 389 Query: 391 IVFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGVSTGKIDMMTFGLGCGIAGLG 450 I+ FAL VV W +LN+TRLGLFVRA TQNR MA CVGV T K+D F G GIAGLG Sbjct: 390 ILAFALVVVTLAWAVLNRTRLGLFVRATTQNRAMAACVGVRTWKVDSYAFAFGAGIAGLG 449 Query: 451 GVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIAAFGLGEVNKFLEPMAGAVLA 510 G ALSQ+GNVGPDLGQGYI+DSFM VVLGGVGQLAGT++ AFGLG +NK +EP GAVLA Sbjct: 450 GCALSQIGNVGPDLGQGYIIDSFMAVVLGGVGQLAGTIVGAFGLGLINKCIEPFYGAVLA 509 Query: 511 KIAILVFIIVFIQKRPQGLFALKGRSVE 538 KI +LV I++FIQKRPQGLFALKGRS E Sbjct: 510 KIFVLVLIVLFIQKRPQGLFALKGRSAE 537 >SMb20604 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Sme Sinorhizobium meliloti Length = 537 Score = 441 bits (1134), Expect = e-123, Method: Compositional matrix adjust. Identities = 273/535 (51%), Positives = 352/535 (65%), Gaps = 25/535 (4%) Query: 20 ALGAFAAIDPALLKPLGGDD-----PDARIDAVNQ-IAALAND---DALKILNALNSDAL 70 AL F A+ P L G D +A++ +++ IAALA + + IL AL L Sbjct: 11 ALFLFVAMAPGLRAEEGLRDLVNALGEAKLSEMDEHIAALAKTGKPEVVAILEALGEGEL 70 Query: 71 YVTPA-GDVLIVDDAGKAF---NPAT-DQTGPAPDDA-EGITVNNRLRGAVDGALSGLKL 124 Y A G VL+ ++G +P + D G AP A I VNN +R AV AL L L Sbjct: 71 YARKADGQVLLTKESGSNLTLTDPISGDSAGEAPKAALSKIRVNNSVRRAVRTALGSLTL 130 Query: 125 LSPQRDQRLAAAGELLKNADPAQIPLIEKALAKESDPQIKDVLQQVQATANLHSTDPAA- 183 LSP R+QRL AA +L++ D + +IE ALA E D ++ VL+Q +AT L S P Sbjct: 131 LSPDRNQRLRAAQSVLQSPDADALGVIENALAAEKDGAVRAVLEQARATMLLLSDRPVEE 190 Query: 184 RRAAVKKLAETTNASLKPVLENMLAKNPDGSYVEADEGVRIEAVRTLSALDRHLAIVDFA 243 ++ AV+ L E P+L L ADE ++ + L+++++ A + Sbjct: 191 KKEAVRLLEENGGREALPILSAALGS--------ADESLKPDIEAALASIEQAQAFWNAG 242 Query: 244 GKLFYGVSLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAI 303 ++YG+SLGSVLLLAA+GLAITFG+MGIINMAHGE++M+GAYTT++ Q V R FP Sbjct: 243 QNIWYGLSLGSVLLLAAIGLAITFGVMGIINMAHGEMVMLGAYTTFLVQDVVRTSFPHLF 302 Query: 304 DAYLVVALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQGVRSIFGAQN 363 + L +ALP AF+V AVG+ALER VIR+LYGRPLETLL TWGISL+L Q VR+IFG N Sbjct: 303 EWSLAIALPLAFLVTGAVGLALERGVIRFLYGRPLETLLATWGISLILQQTVRTIFGPTN 362 Query: 364 VEVANPSWMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQNRR 423 EV NPSWMSG LG L +++NR+ I+ FAL V A+ +L KT +GL +RAVTQNRR Sbjct: 363 REVGNPSWMSGAFE-LGGLAITWNRLWIIVFALAVFAALLFLLKKTPMGLQMRAVTQNRR 421 Query: 424 MADCVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQ 483 MA +G+ T +D +TF LG GIAG+ GVALSQ+ NV P+LGQGYI+DSFMVVV GGVG Sbjct: 422 MASSMGIRTPWVDALTFALGSGIAGIAGVALSQIDNVSPNLGQGYIIDSFMVVVFGGVGN 481 Query: 484 LAGTVIAAFGLGEVNKFLEPMAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 538 L GT++ AF LG +NKFLEP AGAVL KI +LV II+FIQKRP+GLFALKGR+VE Sbjct: 482 LWGTLVGAFSLGILNKFLEPYAGAVLGKILVLVLIILFIQKRPRGLFALKGRAVE 536 >YPO1188 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Ype Yersinia pestis Length = 533 Score = 434 bits (1115), Expect = e-121, Method: Compositional matrix adjust. Identities = 261/489 (53%), Positives = 343/489 (70%), Gaps = 8/489 (1%) Query: 47 VNQIAALANDDALKILNALNSDALYVTPAGDVLIVDDAGKAFNPATDQTGPAPDDAEGIT 106 + Q A + L +L AL + + V AG I ++ ++ N Q+ P + I Sbjct: 50 LQQWATEPDASRLPLLQALKQETVVVDSAGQAFIKNN--QSINSLEGQSQPT-GTLKKIW 106 Query: 107 VNNRLRGAVDGALSGLKLLSPQRDQRLAAAGELLKNADPAQIPLIEKALAKESDPQIKDV 166 +NNRLR + AL+ +L+S RL AA EL + A Q+PL+ + L E+D Q+K+ Sbjct: 107 LNNRLRILIANALAAQRLVSDDETVRLQAAVELQRQAQSDQLPLLNQRLKLETDSQVKEA 166 Query: 167 LQQVQATANLHSTDPAARRAAVKKLAETTNASLKPVLENMLAKNPDGSYVEADEGVRIEA 226 L A L ++P R AV+ L ++ + + L+++ + VE +E VR A Sbjct: 167 LSIALANLQLTDSNPQVRLNAVQLLGQSGSPQTQSRLQSL-----TDTQVEPNEQVRAAA 221 Query: 227 VRTLSALDRHLAIVDFAGKLFYGVSLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAY 286 +L + L I + G++F G+SLGS+LLLAALGLAIT+GL+G+INMAHGE+LM+GAY Sbjct: 222 ATSLKQIQHRLMIGEVIGQVFSGLSLGSILLLAALGLAITYGLLGVINMAHGEMLMLGAY 281 Query: 287 TTYVCQLVFRKFFPGAIDAYLVVALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWG 346 + Y+ Q +F++F P + Y ++ALP AF + A +G+ALER VIR LYGRPLETLL TWG Sbjct: 282 SAYLVQSLFQQFAPHWLALYPLIALPVAFFITAGIGMALERTVIRHLYGRPLETLLATWG 341 Query: 347 ISLMLMQGVRSIFGAQNVEVANPSWMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLIL 406 ISLML+QG+R +FG QN+EVANP+W+SGGV VL +LVL +NRI ++ F + V+ WL+L Sbjct: 342 ISLMLIQGIRMLFGPQNLEVANPAWLSGGVQVLPNLVLPWNRIAVIAFVIIVLLLTWLLL 401 Query: 407 NKTRLGLFVRAVTQNRRMADCVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQ 466 NKTRLGL VRAVTQNR MA C GV+TG++DM+ FGLG GIAGLGGVALSQLGNVGP+LGQ Sbjct: 402 NKTRLGLQVRAVTQNRAMAACCGVATGRVDMLAFGLGSGIAGLGGVALSQLGNVGPELGQ 461 Query: 467 GYIVDSFMVVVLGGVGQLAGTVIAAFGLGEVNKFLEPMAGAVLAKIAILVFIIVFIQKRP 526 GYI+DSF+VVVLGGVGQLAG+V+AA GLG +NK LEP GAVL KI ILV II+FIQKRP Sbjct: 462 GYIIDSFLVVVLGGVGQLAGSVVAALGLGMLNKILEPQIGAVLGKILILVLIILFIQKRP 521 Query: 527 QGLFALKGR 535 QGLFALKGR Sbjct: 522 QGLFALKGR 530 >AGc4379 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 616 Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust. Identities = 264/544 (48%), Positives = 350/544 (64%), Gaps = 20/544 (3%) Query: 5 IQFLRGLLATWLCVH-ALGAFAAIDP-ALLKPLGGDDPDARIDAVNQIAALANDDALKIL 62 I+ G + W + A A A DP AL+ LG D + QIAA + + L Sbjct: 82 IRSFLGAIFLWFTMGIAAHAVAQSDPKALIDQLGTADFKQAEVLIGQIAATGDARVVPAL 141 Query: 63 NALNSDALYVTPAGD-VLIVDDAGKAF---NPATDQT-GPAPDDA-EGITVNNRLRGAVD 116 A + LYV + + V + AG F +P T ++ G AP A I VNN LR + Sbjct: 142 EAFAAGDLYVRKSDNLVFMTKPAGSDFTLIDPLTGESAGSAPKAAVTKIRVNNNLRRVIR 201 Query: 117 GALSGLKLLSPQRDQRLAAAGELLKNADPAQIPLIEKALAKESDPQIKDVLQQVQATANL 176 A+ GL LLSP+R RL+AA +LK + L+E A++KE+D +++ +++ +A + L Sbjct: 202 AAMGGLTLLSPERAVRLSAADAVLKAPSAENLELLEAAISKETDNEVRTRMEEARAVSLL 261 Query: 177 HSTDPAARRAAVKKLAETTNASL--KPVLENMLAKNPDGSYVEADEGVRIEAVRTLSALD 234 S P VKK A T L + + ++A P D ++ + +S+++ Sbjct: 262 SSDRPLE----VKKEAIATIKKLGGRDAISILMAATPS-----VDPSLKPDVDEAISSIE 312 Query: 235 RHLAIVDFAGKLFYGVSLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLV 294 LA D+A ++YG+SLGSVLLLAA+GLAITFG+MGIINMAHGE++MIGAY+T++ Q V Sbjct: 313 SALAFWDYAQNVWYGLSLGSVLLLAAIGLAITFGVMGIINMAHGEMVMIGAYSTFMVQEV 372 Query: 295 FRKFFPGAIDAYLVVALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQG 354 R FPG D L +ALP AF+V VG+ +ER VIR+LYGRPLETLL TWGISLML QG Sbjct: 373 IRSHFPGLFDWSLAIALPVAFLVTGFVGLVMERGVIRFLYGRPLETLLATWGISLMLQQG 432 Query: 355 VRSIFGAQNVEVANPSWMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLF 414 VRSIFG N EV +P WMSG +V G L ++NR+ IV F+L V FA+ ++L ++ GL Sbjct: 433 VRSIFGPTNREVGSPGWMSGSFSV-GYLNFTWNRVWIVCFSLSVFFALLVLLKRSAFGLQ 491 Query: 415 VRAVTQNRRMADCVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFM 474 +RAVTQNRRMA +G+ T +D TF LG G+AGL GVALSQ+ NV P+LGQ YI+DSFM Sbjct: 492 MRAVTQNRRMASSMGIRTPWVDAFTFALGSGVAGLAGVALSQIDNVSPNLGQSYIIDSFM 551 Query: 475 VVVLGGVGQLAGTVIAAFGLGEVNKFLEPMAGAVLAKIAILVFIIVFIQKRPQGLFALKG 534 VVV GGVG L GT++ A LG +NKFLEP GAVL KI +LV II+FIQKRP+GLFALKG Sbjct: 552 VVVFGGVGNLWGTLVGALSLGVLNKFLEPTVGAVLGKILVLVLIILFIQKRPRGLFALKG 611 Query: 535 RSVE 538 R++E Sbjct: 612 RAIE 615 >PA4859 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Pae Pseudomonas aeruginosa Length = 317 Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust. Identities = 219/317 (69%), Positives = 266/317 (83%) Query: 222 VRIEAVRTLSALDRHLAIVDFAGKLFYGVSLGSVLLLAALGLAITFGLMGIINMAHGELL 281 +RI A +L+ + R L + D G+ F G+SLGS+LLLAALGLAIT+GL+G+INMAHGE+L Sbjct: 1 MRIAAATSLAQVKRRLLVGDLLGQAFSGLSLGSILLLAALGLAITYGLLGVINMAHGEML 60 Query: 282 MIGAYTTYVCQLVFRKFFPGAIDAYLVVALPAAFIVAAAVGIALERLVIRWLYGRPLETL 341 M+GAY+TYV QL+F++ P + Y ++ALP AF V+AA+G+ALER VIR LYGRPLETL Sbjct: 61 MLGAYSTYVVQLLFQRLAPEWLALYPLLALPVAFCVSAAIGMALERTVIRHLYGRPLETL 120 Query: 342 LCTWGISLMLMQGVRSIFGAQNVEVANPSWMSGGVTVLGSLVLSYNRIVIVFFALFVVFA 401 L TWGISL+L+Q VR +FGAQNVEVANP+W+SGG+ VL +LVL +NRIVI+ FALFV+ Sbjct: 121 LATWGISLVLIQLVRMLFGAQNVEVANPAWLSGGIQVLPNLVLPWNRIVIIGFALFVLLL 180 Query: 402 VWLILNKTRLGLFVRAVTQNRRMADCVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVG 461 WL+LN+TRLGL VRAVTQNR MA C GV TG++DM+ FGLG GIAGLGGVALSQ+GNVG Sbjct: 181 TWLLLNRTRLGLNVRAVTQNRNMAACCGVPTGRVDMLAFGLGSGIAGLGGVALSQVGNVG 240 Query: 462 PDLGQGYIVDSFMVVVLGGVGQLAGTVIAAFGLGEVNKFLEPMAGAVLAKIAILVFIIVF 521 PDLGQGYI+DSF+VVVLGGVGQLAG+V+AAFGLG NK LEP GAVL KI IL I++F Sbjct: 241 PDLGQGYIIDSFLVVVLGGVGQLAGSVLAAFGLGVANKILEPQIGAVLGKILILALIVLF 300 Query: 522 IQKRPQGLFALKGRSVE 538 IQKRPQGLFALKGR ++ Sbjct: 301 IQKRPQGLFALKGRVID 317