BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0017.p (376 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2039 [E] COG4177 ABC-type branched-chain amino acid transport... 449 e-126 AGc4378 [E] COG4177 ABC-type branched-chain amino acid transport... 413 e-115 PA4860 [E] COG4177 ABC-type branched-chain amino acid transport ... 410 e-114 SMb20603 [E] COG4177 ABC-type branched-chain amino acid transpor... 409 e-114 mll0759 Non COG 403 e-112 >RSc2039 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Rso Ralstonia solanacearum Length = 396 Score = 449 bits (1155), Expect = e-126, Method: Compositional matrix adjust. Identities = 239/357 (66%), Positives = 289/357 (80%), Gaps = 1/357 (0%) Query: 7 RPSLFNRPSWTGIVICTIVLAL-LPVCNLLFPADSALHVSSYTIALVGKFMCYAMAALAL 65 R L +R W+ + +++ + +PVC L PA LH+S+Y + LVGK MCYA+AALAL Sbjct: 13 RMPLLSRWGWSVLAAAALLVCVGVPVCALAVPAGHPLHLSAYALTLVGKIMCYALAALAL 72 Query: 66 DLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGRDGVYQSNLPDFMVFLNWKAYPWYWW 125 DLVWGY GILSLGHG+FFALGGYA GMYLMRAIGRDGVYQS+LPDFMVFL+WK PW+W Sbjct: 73 DLVWGYCGILSLGHGLFFALGGYAMGMYLMRAIGRDGVYQSDLPDFMVFLDWKELPWFWH 132 Query: 126 MTDHFWFSMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDTGFG 185 T HF ++ LLVVLVPG+LA++FG+FAFRSR+KGVY SIITQAMT+A MLLFFRN+TGFG Sbjct: 133 GTGHFAWAALLVVLVPGVLAWLFGFFAFRSRVKGVYLSIITQAMTYAAMLLFFRNETGFG 192 Query: 186 GNNGFTDFKRILGFTITAPATKAVLYLVTLALLFGALVLCRMIVTSKLGRVLQGVRDSES 245 GNNGFTDFKRILG+ I A +T+ VL++ T L A + CR IVTSK GRV+ +RD+E+ Sbjct: 193 GNNGFTDFKRILGYPIAAVSTRTVLFVATFIALVLAFIACRAIVTSKFGRVVTAIRDAEA 252 Query: 246 RLMFIGYNPLWFKLFVWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGR 305 R+MF GY+PL +KLFVWT SAV+CGIAGALYVPQVGIINPSEMSP NSIEM +W AVGGR Sbjct: 253 RVMFSGYSPLGYKLFVWTFSAVLCGIAGALYVPQVGIINPSEMSPGNSIEMAVWVAVGGR 312 Query: 306 GTLIGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQKFKKR 362 GTL+GPI+GAF VNG K+ TA P+ WL+ LG +F+LVTLFLP G+LGL++ R Sbjct: 313 GTLVGPIVGAFLVNGAKTVLTAWVPEYWLFVLGAVFVLVTLFLPNGVLGLLRGRSGR 369 >AGc4378 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 392 Score = 413 bits (1061), Expect = e-115, Method: Compositional matrix adjust. Identities = 212/333 (63%), Positives = 262/333 (78%), Gaps = 1/333 (0%) Query: 28 LLPVCNLLFPADSALHVSSYTIALVGKFMCYAMAALALDLVWGYTGILSLGHGVFFALGG 87 L+P NLL P SA + +Y ++++GK++ YA+ ALALDLVWGY GILSLGH FFALGG Sbjct: 27 LVPASNLLLPEGSAFRIPTYIMSMLGKYLAYALLALALDLVWGYCGILSLGHAAFFALGG 86 Query: 88 YAHGMYLMRAIGRDGVY-QSNLPDFMVFLNWKAYPWYWWMTDHFWFSMLLVVLVPGLLAF 146 YA GMYLMR IG GVY LPDFMVFLNWK PW+W D FWF+ L+V++VPGLLAF Sbjct: 87 YAMGMYLMRQIGTRGVYGHPVLPDFMVFLNWKELPWFWHGFDMFWFAALMVLVVPGLLAF 146 Query: 147 VFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDTGFGGNNGFTDFKRILGFTITAPAT 206 VFG+FAFRSR+ GVY SIITQAMT+A +L FFRND GFGGNNG TDFK ILGF++ A T Sbjct: 147 VFGWFAFRSRVNGVYLSIITQAMTYALLLAFFRNDMGFGGNNGLTDFKDILGFSVQADGT 206 Query: 207 KAVLYLVTLALLFGALVLCRMIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSA 266 +A+L+ +T A+L +L++ IV SK G+VL GVRD+ESR+ F+G+ KLF + +SA Sbjct: 207 RAMLFAMTAAMLALSLLIASGIVNSKFGKVLVGVRDAESRVRFLGFRVENIKLFTFVVSA 266 Query: 267 VICGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGRGTLIGPIIGAFTVNGLKSWFT 326 ++ G+AGAL+VPQVGIINP E SPANSIE+V+W AVGGRGTLIGPIIGA VNG KS+FT Sbjct: 267 MMAGVAGALFVPQVGIINPGEFSPANSIEVVVWTAVGGRGTLIGPIIGALLVNGGKSYFT 326 Query: 327 AAFPDLWLYALGLIFILVTLFLPQGILGLVQKF 359 AFP+ WL+ALG +FI VTLF P+GI+G +Q + Sbjct: 327 GAFPEFWLFALGGLFIAVTLFFPKGIVGTIQHY 359 >PA4860 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Pae Pseudomonas aeruginosa Length = 359 Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust. Identities = 211/309 (68%), Positives = 252/309 (81%), Gaps = 5/309 (1%) Query: 37 PADSALHVSSYTIALVGKFMCYAMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMR 96 PADSALH+S+Y++ L GK +CYA+ ALALDLVWGY G+LSLGHG+FFALGGYA GMYLMR Sbjct: 39 PADSALHLSAYSLTLTGKILCYAIVALALDLVWGYAGLLSLGHGLFFALGGYAMGMYLMR 98 Query: 97 AIGRDGVYQSNLPDFMVFLNWKAYPWYWWMTDHFWFSMLLVVLVPGLLAFVFGYFAFRSR 156 D +LP FM FL+W PWYW T HF +++ LVVLVPG LAF FGYFAFRSR Sbjct: 99 QASGD-----SLPAFMTFLSWNELPWYWAGTQHFLWALCLVVLVPGALAFAFGYFAFRSR 153 Query: 157 IKGVYFSIITQAMTFAFMLLFFRNDTGFGGNNGFTDFKRILGFTITAPATKAVLYLVTLA 216 I+GVYFSI+TQA+TFA MLLFFRN+TGFGGNNGFTDF+ ILGF ITAP T+A L+L T+A Sbjct: 154 IRGVYFSIMTQALTFAGMLLFFRNETGFGGNNGFTDFRSILGFPITAPGTRAALFLATVA 213 Query: 217 LLFGALVLCRMIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSAVICGIAGALY 276 LL +L+L + SK GRVL +RD+E+RLMF GY+P +KLFVWTLSAV+CG+AGAL+ Sbjct: 214 LLAASLLLGWRLARSKFGRVLTALRDAENRLMFCGYDPRGYKLFVWTLSAVLCGLAGALF 273 Query: 277 VPQVGIINPSEMSPANSIEMVIWAAVGGRGTLIGPIIGAFTVNGLKSWFTAAFPDLWLYA 336 VPQVGIINPSEMSP NSIE +W A+GGRGTL+GP++GA VNG KSWFT AFP+ WL+ Sbjct: 274 VPQVGIINPSEMSPTNSIEAAVWVALGGRGTLLGPLLGAGVVNGAKSWFTVAFPEYWLFF 333 Query: 337 LGLIFILVT 345 LG +FI+VT Sbjct: 334 LGALFIVVT 342 >SMb20603 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 391 Score = 409 bits (1052), Expect = e-114, Method: Compositional matrix adjust. Identities = 225/368 (61%), Positives = 275/368 (74%), Gaps = 8/368 (2%) Query: 17 TGIVICTIVLAL---LPVCNLLFPADSALHVSSYTIALVGKFMCYAMAALALDLVWGYTG 73 T +V I+LAL +P NLL + LHV +Y ++L GK++ YA+ ALALDLVWG+ G Sbjct: 13 TIVVAVAILLALAVIVPALNLLTAPEHPLHVPTYLVSLFGKYLTYALLALALDLVWGFCG 72 Query: 74 ILSLGHGVFFALGGYAHGMYLMRAIGRDGVYQSNL-PDFMVFLNWKAYPWYWWMTDHFWF 132 ILSLGH FFALGGYA GMYLMR IG G Y + L PDFMVFLNWK PW+W+ D FWF Sbjct: 73 ILSLGHAAFFALGGYAMGMYLMRQIGARGSYGNPLLPDFMVFLNWKELPWFWYGFDMFWF 132 Query: 133 SMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDTGFGGNNGFTD 192 + L+VVLVPGLLAFVFG+FAFRSR+ GVY SIITQAMT+A +L FFRND GFGGNNG TD Sbjct: 133 AALMVVLVPGLLAFVFGWFAFRSRVNGVYLSIITQAMTYALLLAFFRNDMGFGGNNGLTD 192 Query: 193 FKRILGFTITAPATKAVLYLVTLALLFGALVLCRMIVTSKLGRVLQGVRDSESRLMFIGY 252 FK ILGF I A T+A L+ + L +LV+ IV SK G+VL +RD+ESR F+GY Sbjct: 193 FKDILGFNIQADGTRAALFAASALALAVSLVVTSGIVRSKFGKVLVALRDAESRTRFLGY 252 Query: 253 NPLWFKLFVWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGRGTLIGPI 312 KLF +T+SA++ G+AGALYVPQVGIINP E +PANSIE+VIW AVGGRGTLIGPI Sbjct: 253 RVEHMKLFAFTVSAMMAGVAGALYVPQVGIINPGEFAPANSIEVVIWTAVGGRGTLIGPI 312 Query: 313 IGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQKF----KKRDAASAE 368 +GA VNG KS FTAAFP+ WL+ALG +F+LVTLFLP+G++G Q + + AA+ + Sbjct: 313 VGAILVNGGKSIFTAAFPEFWLFALGGLFVLVTLFLPKGVVGTAQSYLASRRTSHAAARK 372 Query: 369 GSASKEAA 376 S S++AA Sbjct: 373 ESESEKAA 380 >mll0759 Non COG Length = 411 Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust. Identities = 215/358 (60%), Positives = 268/358 (74%), Gaps = 1/358 (0%) Query: 19 IVICTIVLALLPVCNLLFPADSALHVSSYTIALVGKFMCYAMAALALDLVWGYTGILSLG 78 I+I ++P+ NL SA +V +Y +AL GK++CYA+ ALALDLVWGY GILSLG Sbjct: 19 ILILLAAAIVVPLLNLAVSPTSAFYVPAYIVALTGKYLCYALLALALDLVWGYCGILSLG 78 Query: 79 HGVFFALGGYAHGMYLMRAIGRDGVYQSN-LPDFMVFLNWKAYPWYWWMTDHFWFSMLLV 137 HG FFALGGYA GMYLMR IG GVY + LPDFMVFLN+K PW+W+ DHFWF+ ++V Sbjct: 79 HGAFFALGGYAMGMYLMRQIGSRGVYGNPILPDFMVFLNYKELPWFWYGFDHFWFAAIMV 138 Query: 138 VLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDTGFGGNNGFTDFKRIL 197 + VPGLLAFVFG+FAFRSR+ GVY SIITQAMT+A +L FFRND GFGGNNG TDFK IL Sbjct: 139 LAVPGLLAFVFGWFAFRSRVTGVYLSIITQAMTYALLLAFFRNDMGFGGNNGLTDFKDIL 198 Query: 198 GFTITAPATKAVLYLVTLALLFGALVLCRMIVTSKLGRVLQGVRDSESRLMFIGYNPLWF 257 GF + A AT++ L+ + A+L A+ + IV SK G++L VRD+ESR F+G+ Sbjct: 199 GFNVQADATRSALFAASAAMLALAVFITWAIVGSKYGKLLMAVRDAESRTRFLGWRAENV 258 Query: 258 KLFVWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGRGTLIGPIIGAFT 317 KLF +T+SAV+ GIAGALYVPQVGIINP E P+NSIE+VIWAAVGGRGT++GPIIGA Sbjct: 259 KLFAFTVSAVMAGIAGALYVPQVGIINPGEFEPSNSIEVVIWAAVGGRGTIVGPIIGALL 318 Query: 318 VNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQKFKKRDAASAEGSASKEA 375 VN KSWFT P+LWL+ALG +F+ VTL LP+GI+G+ ++ A S ++EA Sbjct: 319 VNAGKSWFTGVLPELWLFALGGLFVAVTLLLPKGIIGMWDSWRGNAKALRAASVAEEA 376