BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0008.p (210 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4893 [OK] COG0378 Ni2+-binding GTPase involved in regulation o... 299 3e-81 AGc4348 [OK] COG0378 Ni2+-binding GTPase involved in regulation ... 299 3e-81 SMc01830 [OK] COG0378 Ni2+-binding GTPase involved in regulation... 297 1e-80 RSc2029 [OK] COG0378 Ni2+-binding GTPase involved in regulation ... 291 7e-79 alr0735 [OK] COG0378 Ni2+-binding GTPase involved in regulation ... 290 1e-78 >PA4893 [OK] COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Pae Pseudomonas aeruginosa Length = 204 Score = 299 bits (765), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 139/200 (69%), Positives = 175/200 (87%) Query: 5 TSNPLRVGIGGPVGSGKTALCEMLCKRMRDHYDMAVITNDIYTKEDMEILLRADALPAER 64 TS PLRVGIGGPVGSGKTAL LC+ +R+ Y++AV+TNDIYT+ED E L+R +AL ER Sbjct: 2 TSQPLRVGIGGPVGSGKTALTLALCRELRERYNLAVVTNDIYTQEDAEFLVRNEALAPER 61 Query: 65 LMGVETGGCPHTAIREDASINLEAIARMSADFPDLDLILVESGGDNLAATFSPELSDLTI 124 ++GVETGGCPHTAIREDASINLEA+ +++ FP L+LILVESGGDNL+ATFSPELSDLT+ Sbjct: 62 IIGVETGGCPHTAIREDASINLEAVDQLNRRFPGLELILVESGGDNLSATFSPELSDLTL 121 Query: 125 YVIDVAGGEKIPRKGGPGITRSDLLIINKTDLAPYVGANLDIMAADAKRMRGERPFVFTN 184 YVIDV+ G+KIPRKGGPGI +SDLL+INK DLAP VGA+LD+M DA+RMRG++PFVF+N Sbjct: 122 YVIDVSAGDKIPRKGGPGICKSDLLVINKIDLAPLVGASLDVMDRDARRMRGDKPFVFSN 181 Query: 185 LRSGDGVEKVIEYIRKQGLL 204 ++G G++++I +I +QGLL Sbjct: 182 QKTGQGLDEIIAFIERQGLL 201 >AGc4348 [OK] COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 204 Score = 299 bits (765), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 140/204 (68%), Positives = 173/204 (84%) Query: 1 MSNSTSNPLRVGIGGPVGSGKTALCEMLCKRMRDHYDMAVITNDIYTKEDMEILLRADAL 60 M S + PLRVGIGGPVGSGKTAL E LCK M Y +AV+TNDIYTKED E L+R AL Sbjct: 1 MMKSGNGPLRVGIGGPVGSGKTALTEKLCKAMSGDYSVAVVTNDIYTKEDAEALVRMQAL 60 Query: 61 PAERLMGVETGGCPHTAIREDASINLEAIARMSADFPDLDLILVESGGDNLAATFSPELS 120 P+ER++GVETGGCPHTAIREDA+INL+AIA ++A FPDLD++ +ESGGDNLAATFSP+L+ Sbjct: 61 PSERIVGVETGGCPHTAIREDATINLQAIAGLNAQFPDLDVVFIESGGDNLAATFSPDLA 120 Query: 121 DLTIYVIDVAGGEKIPRKGGPGITRSDLLIINKTDLAPYVGANLDIMAADAKRMRGERPF 180 D+TIYVI V GE+IPRKGGPGITRSDLL+INK DLAPYVGA+L +M +DA RMR PF Sbjct: 121 DITIYVISVCQGEEIPRKGGPGITRSDLLVINKKDLAPYVGADLTVMDSDATRMRNAMPF 180 Query: 181 VFTNLRSGDGVEKVIEYIRKQGLL 204 VFT+++ GDGV++++ ++++QG L Sbjct: 181 VFTDMKRGDGVDRIVGFLKEQGGL 204 >SMc01830 [OK] COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Sme Sinorhizobium meliloti Length = 203 Score = 297 bits (760), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 139/201 (69%), Positives = 171/201 (85%) Query: 4 STSNPLRVGIGGPVGSGKTALCEMLCKRMRDHYDMAVITNDIYTKEDMEILLRADALPAE 63 S + PLR+GIGGPVGSGKTAL + LCK MR+ Y +AV+TNDIYTKED E L+R ALP+E Sbjct: 3 SKNGPLRIGIGGPVGSGKTALTDKLCKAMREKYSVAVVTNDIYTKEDAEALVRMQALPSE 62 Query: 64 RLMGVETGGCPHTAIREDASINLEAIARMSADFPDLDLILVESGGDNLAATFSPELSDLT 123 R++GVETGGCPHTAIREDASINL+AIA ++ PDLD++ +ESGGDNLAATFSP+L+DLT Sbjct: 63 RIVGVETGGCPHTAIREDASINLQAIADLNRRIPDLDVVFIESGGDNLAATFSPDLADLT 122 Query: 124 IYVIDVAGGEKIPRKGGPGITRSDLLIINKTDLAPYVGANLDIMAADAKRMRGERPFVFT 183 IYVI V GE+IPRKGGPGITRSDLL+INK DLAPYVGA+L +M DA RMR E+PFVF+ Sbjct: 123 IYVISVCQGEEIPRKGGPGITRSDLLVINKKDLAPYVGADLGVMERDAARMRAEKPFVFS 182 Query: 184 NLRSGDGVEKVIEYIRKQGLL 204 +++ GDGVE+++E++ G L Sbjct: 183 DMKRGDGVERIVEFLTVHGGL 203 >RSc2029 [OK] COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Rso Ralstonia solanacearum Length = 210 Score = 291 bits (745), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 137/184 (74%), Positives = 160/184 (86%) Query: 21 KTALCEMLCKRMRDHYDMAVITNDIYTKEDMEILLRADALPAERLMGVETGGCPHTAIRE 80 KT L EMLCK MR+ YD+ ITNDIYTKED +L + ALPAER+MGVETGGCPHTAIRE Sbjct: 21 KTTLLEMLCKAMRERYDLVAITNDIYTKEDQRLLTLSGALPAERIMGVETGGCPHTAIRE 80 Query: 81 DASINLEAIARMSADFPDLDLILVESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGG 140 DASINLEA+ RM A FPD D++ +ESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGG Sbjct: 81 DASINLEAVDRMLARFPDADVVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGG 140 Query: 141 PGITRSDLLIINKTDLAPYVGANLDIMAADAKRMRGERPFVFTNLRSGDGVEKVIEYIRK 200 PGIT+SDLLIINKTDLAPYVGA+LD+MA+DA++MRG+RPFV NL+ G++ V+ +I + Sbjct: 141 PGITKSDLLIINKTDLAPYVGASLDVMASDARKMRGDRPFVMCNLKEQAGLDAVVRFIEQ 200 Query: 201 QGLL 204 QG+L Sbjct: 201 QGML 204 >alr0735 [OK] COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Nos Nostoc sp. PCC 7120 Length = 200 Score = 290 bits (742), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 132/192 (68%), Positives = 164/192 (85%) Query: 7 NPLRVGIGGPVGSGKTALCEMLCKRMRDHYDMAVITNDIYTKEDMEILLRADALPAERLM 66 N RVG+ GPVGSGKTAL + LCK +RD Y +AV+TNDIYT+ED + L+R+ AL ++R++ Sbjct: 2 NAFRVGVAGPVGSGKTALVDALCKALRDRYKLAVVTNDIYTQEDAQFLVRSQALTSDRIL 61 Query: 67 GVETGGCPHTAIREDASINLEAIARMSADFPDLDLILVESGGDNLAATFSPELSDLTIYV 126 GVETGGCPHTAIREDAS+NL AI ++ F DLDL+ +ESGGDNLAATFSPEL DLTIYV Sbjct: 62 GVETGGCPHTAIREDASMNLAAIEQLEQRFTDLDLVFLESGGDNLAATFSPELVDLTIYV 121 Query: 127 IDVAGGEKIPRKGGPGITRSDLLIINKTDLAPYVGANLDIMAADAKRMRGERPFVFTNLR 186 IDVA G+KIPRKGGPGIT+SDLL+INKTDLAPYVGA+L +M DAK+MRG++PF+FTNL+ Sbjct: 122 IDVAAGDKIPRKGGPGITKSDLLVINKTDLAPYVGADLSVMERDAKKMRGDKPFIFTNLK 181 Query: 187 SGDGVEKVIEYI 198 + G+ VIE++ Sbjct: 182 TQQGLNDVIEFV 193