BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0002.p (223 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2935 [TK] COG0745 Response regulators consisting of a CheY-li... 181 2e-45 PA0756 [TK] COG0745 Response regulators consisting of a CheY-lik... 178 7e-45 RSc3392 [TK] COG0745 Response regulators consisting of a CheY-li... 173 3e-43 STM2785 [TK] COG0745 Response regulators consisting of a CheY-li... 173 3e-43 mll7953 [TK] COG0745 Response regulators consisting of a CheY-li... 166 5e-41 >RSc2935 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 235 Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 106/218 (48%), Positives = 141/218 (64%), Gaps = 5/218 (2%) Query: 1 MHILLVEDDIDMSRALVRALERRGFQVSHCGDGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M ILLVED+ +++ L RAL + GF V DG++A + + G D VVLDL +P DG Sbjct: 1 MRILLVEDEGELAAWLARALAQSGFVVERAADGLAAEAFLASGEFDAVVLDLRLPRKDGF 60 Query: 61 HLLQRIRSQDIGTPVIVLTARAAX-----GLNAGADDYLAKPFDLDELDARIRALLRRRT 115 +L +R++D TPV++LTA+ A GLNAGADD+L KPF L EL+AR+ AL+RR Sbjct: 61 AVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALTELEARLMALIRRSR 120 Query: 116 NADDGGQRCGRLRFDRASGAFYCDDEPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 175 RCG L FD AF EPL LTPREH L AL+ K G ++K LF VF Sbjct: 121 GRAFPRLRCGPLEFDTGRKAFLLAGEPLSLTPREHAALSALLHKTGQPISKVHLFDKVFN 180 Query: 176 MEENTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLL 213 ++ ++ +A+EVVVHR+RKKL +G +I+T+RGLGYLL Sbjct: 181 LDSDSSPDAVEVVVHRLRKKLAGSGVQIVTVRGLGYLL 218 >PA0756 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 223 Score = 178 bits (452), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 98/218 (44%), Positives = 139/218 (63%), Gaps = 5/218 (2%) Query: 1 MHILLVEDDIDMSRALVRALERRGFQVSHCGDGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M ILLVED ++ ++V+AL+ G+ V DG++A + L +LD+ +P +DG Sbjct: 1 MRILLVEDHPQLAESVVQALKGAGWTVDLLQDGVAADLALASEEYALAILDVGLPRMDGF 60 Query: 61 HLLQRIRSQDIGTPVIVLTARA-----AXGLNAGADDYLAKPFDLDELDARIRALLRRRT 115 +L R+R + PV++LTAR GLN GADDYLAKPF+L EL+AR++ALLRR Sbjct: 61 EVLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 116 NADDGGQRCGRLRFDRASGAFYCDDEPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 175 + QRCG L +D + F D++PL LT RE +L+A+IA+PG ++KE+L VF Sbjct: 121 LGGEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQVFG 180 Query: 176 MEENTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLL 213 ++E +AIE+ VHR+RKKL I+T RGLGYLL Sbjct: 181 LDEEASADAIEIYVHRLRKKLEGGAVRIVTFRGLGYLL 218 >RSc3392 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 224 Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 100/224 (44%), Positives = 135/224 (60%), Gaps = 5/224 (2%) Query: 1 MHILLVEDDIDMSRALVRALERRGFQVSHCGDGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M +LL+ED+ +++ L AL R F V H DG SA + + D+V+LDL +P L G Sbjct: 1 MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADTLLLTQHYDVVLLDLQLPSLSGR 60 Query: 61 HLLQRIRSQDIGTPVIVLTARA-----AXGLNAGADDYLAKPFDLDELDARIRALLRRRT 115 +LQR+R + PV++LTA L AGADDYL KPF++ EL ARI+ L+RR T Sbjct: 61 AVLQRLRDRRNAVPVMILTAAGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120 Query: 116 NADDGGQRCGRLRFDRASGAFYCDDEPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 175 A+ +CG L + S F PL L REHT+L+ L+ K G V+K L VF Sbjct: 121 PANAVELQCGDLSYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180 Query: 176 MEENTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLRDRQQQ 219 +E++ EAIE+ +HR+RKKL + A I+TLRGLGYLLRD Q Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSAATIVTLRGLGYLLRDASTQ 224 >STM2785 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sty Salmonella typhimurium LT2 Length = 224 Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 97/218 (44%), Positives = 137/218 (62%), Gaps = 6/218 (2%) Query: 1 MHILLVEDDIDMSRALVRALERRGFQVSHCGDGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M +LL ED+ +++ L +AL + GF V DG++A + + L VLD+N+PG+DGL Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGL 60 Query: 61 HLLQRIRSQDIGTPVIVLTARAA-----XGLNAGADDYLAKPFDLDELDARIRALLRRRT 115 ++QR+R + PV++LTAR+A GLN GADDYL KPF+L+ELDAR+RALLRR Sbjct: 61 EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120 Query: 116 NADDGGQRCGRLRFDRASGAFYCDDEPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 175 Q+ G L F G F +PL LTPRE LL L+ + V++++LF VF Sbjct: 121 GQVHEVQQLGELIF-HDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179 Query: 176 MEENTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLL 213 + + E+IE+ +HR+RKKL + I TLRGLGY+L Sbjct: 180 LNDEVSPESIELYIHRLRKKLQGSDVRITTLRGLGYVL 217 >mll7953 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Mlo Mesorhizobium loti Length = 223 Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 99/223 (44%), Positives = 132/223 (59%), Gaps = 5/223 (2%) Query: 1 MHILLVEDDIDMSRALVRALERRGFQVSHCGDGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M +LLVED+ +++ L + L + + V DG + G LV+LDL +P + GL Sbjct: 1 MRLLLVEDNRELADWLGKTLRQANYVVDIVHDGEDVEHALAAGDHALVILDLALPRMSGL 60 Query: 61 HLLQRIRSQDIGTPVIVLTARAA-----XGLNAGADDYLAKPFDLDELDARIRALLRRRT 115 +L+ +R++ PVIVLTA A+ GLN GADDYLAKPF ++EL+ARIRA LRR Sbjct: 61 EVLRTLRARGNRVPVIVLTANASLDGRVKGLNEGADDYLAKPFQIEELEARIRAQLRRAN 120 Query: 116 NADDGGQRCGRLRFDRASGAFYCDDEPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 175 + CG L FD + F EPL LTPREH +L+ L+ K G V+K L ++ Sbjct: 121 DRTAPVVACGDLVFDTNTRLFSLAGEPLALTPREHAVLEQLMVKAGRTVSKAALSAAIYD 180 Query: 176 MEENTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLRDRQQ 218 E + AIE+ VHRVRKKL + +I TLRGLGYLLR Q Sbjct: 181 FETDADPSAIEIYVHRVRKKLEGSRVQIATLRGLGYLLRHEDQ 223