BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0002.p (288 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2307 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp... 387 e-107 RSp1508 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 327 2e-89 CAC0108 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 115 8e-26 MJ0413 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp... 110 4e-24 BH1210 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp... 105 9e-23 >PA2307 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Pae Pseudomonas aeruginosa Length = 288 Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust. Identities = 222/288 (77%), Positives = 251/288 (87%) Query: 1 MPQTPPIRDEYELPLTPLPGLVLQRQFSLPQRIWQQGWVRKGAILLLLALIWEGVARWQN 60 M + +R+EYE+ L PL + L+R+ L QR+WQQ W+RKG IL LLAL WE AR Q Sbjct: 1 MSRVTRVREEYEVQLEPLLEVSLERRLPLSQRLWQQSWLRKGLILALLALAWELAARVQG 60 Query: 61 NDLLLPTFLQTAQAFIDGLKTGELFGKTWLSLQVLLKAYLLGIVAAFVLTTLAVSTQFGR 120 NDLLLP FLQTA+A +GL +GEL K +SL VL K YLLGIV AFVLT+LAVSTQ GR Sbjct: 61 NDLLLPGFLQTARALGEGLASGELPAKAGISLLVLFKGYLLGIVLAFVLTSLAVSTQLGR 120 Query: 121 DLLGTLTSMFNPLPAIALLPIALLWFGLGEGSLIFVLVHSVLWALAVNTYAGFLGVSDTL 180 DLLGTLT+MFNPLPAIALLP+ALLWFGLG+ SLIFVLVHSVLWALA+NTYAGFLGVS+TL Sbjct: 121 DLLGTLTAMFNPLPAIALLPLALLWFGLGQNSLIFVLVHSVLWALALNTYAGFLGVSETL 180 Query: 181 RMAGRNYGLRGLGFVLQVLVPAALPSILAGLRIGWAFAWRTLIAAELVFGATSGKGGLGW 240 RMAGRNYGLRGL FVL +LVPAALPSILAGL+IGWAFAWRTLIAAELVFGA+SGKGGLGW Sbjct: 181 RMAGRNYGLRGLRFVLLILVPAALPSILAGLKIGWAFAWRTLIAAELVFGASSGKGGLGW 240 Query: 241 YIFQNRNELYTDKVFAGLAMVILIGLLVENLVFNTLERVTVKKWGMQR 288 YIFQNRNELYTDKVFAGLA+V+LIGLLVENLVF ++ER+TVK+WG+QR Sbjct: 241 YIFQNRNELYTDKVFAGLAVVVLIGLLVENLVFGSIERLTVKRWGVQR 288 >RSp1508 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Rso Ralstonia solanacearum Length = 298 Score = 327 bits (838), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 168/266 (63%), Positives = 210/266 (78%) Query: 22 VLQRQFSLPQRIWQQGWVRKGAILLLLALIWEGVARWQNNDLLLPTFLQTAQAFIDGLKT 81 V+++ S+ +R++ Q W+RK AIL+ LAL WEG ARW +N LLLPTF TA+A GL Sbjct: 32 VIEKPLSMAERLYAQAWLRKLAILVALALAWEGGARWLDNPLLLPTFSDTARALWAGLAD 91 Query: 82 GELFGKTWLSLQVLLKAYLLGIVAAFVLTTLAVSTQFGRDLLGTLTSMFNPLPAIALLPI 141 G LF + S+Q LL Y LG+ + L L + ++ G+D L TLT+MFNPLPAIALLPI Sbjct: 92 GTLFARIGTSMQTLLAGYALGLALSCALVVLGIGSRLGQDFLETLTAMFNPLPAIALLPI 151 Query: 142 ALLWFGLGEGSLIFVLVHSVLWALAVNTYAGFLGVSDTLRMAGRNYGLRGLGFVLQVLVP 201 AL+WFGLG GSLIFV+VHSV+WA+++NT+AGFL VS+TLRM GRNYGL G+ ++ Q+L+P Sbjct: 152 ALVWFGLGNGSLIFVIVHSVVWAVSLNTHAGFLSVSNTLRMVGRNYGLSGMAYLTQILIP 211 Query: 202 AALPSILAGLRIGWAFAWRTLIAAELVFGATSGKGGLGWYIFQNRNELYTDKVFAGLAMV 261 AA PSIL GL+IGWAFAWRTLIA+ELVFG +SG+GGLGWYI++N+N L +VFAGL V Sbjct: 212 AAFPSILTGLKIGWAFAWRTLIASELVFGVSSGQGGLGWYIYENKNLLQIPEVFAGLLTV 271 Query: 262 ILIGLLVENLVFNTLERVTVKKWGMQ 287 ILIGLLVENLVF TLE TVK+WGMQ Sbjct: 272 ILIGLLVENLVFRTLEARTVKRWGMQ 297 >CAC0108 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Cac Clostridium acetobutylicum Length = 265 Score = 115 bits (289), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 132/260 (50%), Gaps = 14/260 (5%) Query: 37 GWVRKGAILLLLALIWEGVAR--------WQNNDLLLPTFLQTAQAFIDGLKTGELFGKT 88 G R+ ++L IWE + + W+ P + A A++ +K LF T Sbjct: 10 GIFRRVLFYIILIAIWELIYKVFVDILGVWKAYTFPSPGEVYNALAYL--VKDNTLFIAT 67 Query: 89 WLSLQVLLKAYLLGIVAAFVLTTLAVSTQFGRDLLGTLTSMFNPLPAIALLPIALLWFGL 148 SL L+ Y++ + L + + ++ + L L LP++ +P A+LW+G+ Sbjct: 68 GASLTRLVIGYIIALFIGIALALVCIKYKYVDENLTPLMLGLQTLPSVCWIPFAILWYGI 127 Query: 149 GEGSLIFVLVHSVLWALAVNTYAGFLGVSDTLRMAGRNYGLRGLGFVLQVLVPAALPSIL 208 E S+IFV V L+++A++T +G V+ A R G RG V++P+ALP I+ Sbjct: 128 DERSIIFVTVVGSLFSIAISTISGVKNVNPIYVKAARTMGARGKNLYFDVVIPSALPEII 187 Query: 209 AGLRIGWAFAWRTLIAAELVFGATSGKGGLGWYIFQNRNELYTDKVFAGLAMVILIGLLV 268 +G+R GW+FAWR L+A E++ S GLG + R +V A + ++I GL+ Sbjct: 188 SGMRQGWSFAWRALMAGEML----SATKGLGQVLTAGRELGDISQVMAVMIIIIAFGLIF 243 Query: 269 ENLVFNTLERVTVKKWGMQR 288 + L+F +E+ K G+++ Sbjct: 244 DKLLFEKVEKNIRYKCGLEK 263 >MJ0413 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Mja Methanococcus jannaschii Length = 267 Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 131/252 (51%), Gaps = 7/252 (2%) Query: 22 VLQRQFSLPQRIWQQGWVRKGAILLLLALIWEGVARWQNNDLLLPTFLQTAQAFIDG--- 78 ++ + + +I + V K ++ L +IWE +A + NN ++LP I Sbjct: 1 MMNHKKGISVKINTKELVLKISLPALAVVIWELLAIYINNPVILPRVEAVINVLIHPFQG 60 Query: 79 -LKTGELFGKTWLSLQVLLKAYLLGIVAAFVLTTLAVSTQFGRDLLGTLTSMFNPLPAIA 137 L TG L T +S++ ++ +LL A L L + L TL + P+P +A Sbjct: 61 ILGTGSLIDNTIISIKRVISGFLLASAVAIPLGILMGYYRTVNSLCDTLIELLRPIPPLA 120 Query: 138 LLPIALLWFGLGEGSLIFVLVHSVLWALAVNTYAGFLGVSDTLRMAGRNYGLRGLGFVLQ 197 +P++L WFGLGE S+IF++ + + +NT +G GV L A G +G +++ Sbjct: 121 WVPLSLAWFGLGEMSMIFIIFIGAFFPILINTISGVKGVPTPLIEAALTLGAKGRDILIK 180 Query: 198 VLVPAALPSILAGLRIGWAFAWRTLIAAELVFGATSGKGGLGWYIFQNRNELYTDKVFAG 257 V++PA+ PSIL GLR+G AW ++AAE++ S GLG+ I + D V A Sbjct: 181 VVIPASSPSILTGLRVGAGIAWMCVVAAEML---PSSNAGLGYLIMYAYSLSRMDVVIAC 237 Query: 258 LAMVILIGLLVE 269 + ++ LIGL+++ Sbjct: 238 MIIIGLIGLVLD 249 >BH1210 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Bha Bacillus halodurans Length = 252 Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 7/243 (2%) Query: 48 LALIWEGVARWQ--NNDLLLPTFLQTAQAFIDGLKTGELFGKTWLSLQVLLKAYLLGIVA 105 L IWE V R + L L + + +TG L T+ SL + + + +V Sbjct: 14 LFFIWELVYRLELFQTRLFPSPLLSFVELYKGFFETGILTVATFESLSRIAIGFTIAVVV 73 Query: 106 AFVLTTLAVSTQFGRDLLGTLTSMFNPLPAIALLPIALLWFGLGEGSLIFVLVHSVLWAL 165 L L ++ + LG+L +P+I LPIAL+ G ++IF++V WA+ Sbjct: 74 GSCLGILLALSKIADETLGSLVIALQSVPSIVWLPIALVVLQTGNTAIIFIIVLGGTWAM 133 Query: 166 AVNTYAGFLGVSDTLRMAGRNYGLRGLGFVLQVLVPAALPSILAGLRIGWAFAWRTLIAA 225 +N G V L A R G RG V +V++PA++PS L G+R+ WAF WR LIA Sbjct: 134 TMNMRMGIKNVQPLLIRAARTMGYRGAELVWKVMIPASIPSALTGMRLAWAFGWRALIAG 193 Query: 226 ELVFGATSGKGGLGWYIFQNRNELYTDKVFAGLAMVILIGLLVENLVFNTLERVTVKKWG 285 EL+ G+ + R+ + V A + ++ ++GL+VE L+FN +ER + +WG Sbjct: 194 ELLGRGGLGR-----TLLDARDFFNMELVIAIMMIIAVVGLIVEYLIFNPIERKVLSRWG 248 Query: 286 MQR 288 + Sbjct: 249 YAK 251