BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0200.p (254 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PAE1388 [E] COG0410 ABC-type branched-chain amino acid transport... 202 7e-52 TM1139 [E] COG0410 ABC-type branched-chain amino acid transport ... 202 8e-52 RSp0707 [E] COG0410 ABC-type branched-chain amino acid transport... 201 9e-52 FN1428 [E] COG0410 ABC-type branched-chain amino acid transport ... 197 2e-50 SP0753 [E] COG0410 ABC-type branched-chain amino acid transport ... 197 3e-50 >PAE1388 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Pya Pyrobaculum aerophilum Length = 234 Score = 202 bits (513), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 100/252 (39%), Positives = 166/252 (65%), Gaps = 23/252 (9%) Query: 2 LEVTNLRAGYGAINVLWDVSLTVGQGQLTTIIGPNGAGKTTLLRAIMGLIPIGQGQVTLD 61 L +T L +GYG + VL+ ++ VG + +++GPNGAGKTT L +IMG++ G+V L Sbjct: 3 LRITQLSSGYGKLQVLFGLTFEVGNNSIVSLLGPNGAGKTTTLLSIMGVVKPWGGKVELG 62 Query: 62 GKVLNGMPTWEMSKVSMAMIPEGRMIFRAMSIEENLIVGAFAPQHRAHACQHFARREGLG 121 G + P ++ ++ ++++PEGR +F M++EENL++GA+ + R A Sbjct: 63 GVDVTSAPPYKKVELGLSLVPEGRRLFPEMTVEENLLMGAYTKRAREKA----------- 111 Query: 122 DVVIRACARVKDNLERAYTMFPKLRERRRQLAGSLSGGEAQMLAMARGLMSEPKLLIIDE 181 +D+LE Y++FP+L+ERRRQ AG++SGGE QMLA+AR LM+ P++L+IDE Sbjct: 112 ----------RDSLEFVYSLFPRLKERRRQKAGTMSGGEQQMLAIARALMARPRVLLIDE 161 Query: 182 PSLGLAPVVVNELFEILARLKAEGRTIILVEQNTERAVGVADHVYLMQGGKVILSQKASE 241 PS GLAP VV +LF+ +++L++E +++LVEQN A+ ++D+ Y+++ G+++L SE Sbjct: 162 PSAGLAPKVVADLFQTISQLRSE-MSVLLVEQNVAVALEISDYAYVLENGRIVLQGTPSE 220 Query: 242 VALD-HLHDLYF 252 +A + H+ Y Sbjct: 221 LAENQHVKRAYL 232 >TM1139 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Tma Thermotoga maritima Length = 239 Score = 202 bits (513), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 106/246 (43%), Positives = 167/246 (67%), Gaps = 22/246 (8%) Query: 1 MLEVTNLRAGYGAINVLWDVSLTVGQGQLTTIIGPNGAGKTTLLRAIMGLIPIGQGQVTL 60 +LEV +L YGAI+ + + L V +GQ+ T+IG NGAGKTT L AI GL+ +G++ Sbjct: 5 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 64 Query: 61 DGKVLNGMPTWEMSKVSMAMIPEGRMIFRAMSIEENLIVGAFAPQHRAHACQHFARREGL 120 +G+ + P ++++ +A++PEGR IF +++ ENL++GA+ + + EG Sbjct: 65 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK----------EG- 113 Query: 121 GDVVIRACARVKDNLERAYTMFPKLRERRRQLAGSLSGGEAQMLAMARGLMSEPKLLIID 180 +K +LE +++FP+L+ER +QL G+LSGGE QMLA+ R LMS PKLL++D Sbjct: 114 ----------IKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD 163 Query: 181 EPSLGLAPVVVNELFEILARLKAEGRTIILVEQNTERAVGVADHVYLMQGGKVILSQKAS 240 EPSLGLAP++V+E+FE++ ++ EG TI+LVEQN A+ VA + Y+++ G+++L KAS Sbjct: 164 EPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKAS 223 Query: 241 EVALDH 246 E+ LD+ Sbjct: 224 EL-LDN 228 >RSp0707 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 247 Score = 201 bits (512), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 108/248 (43%), Positives = 159/248 (64%), Gaps = 22/248 (8%) Query: 1 MLEVTNLRAGYGAINVLWDVSLTVGQGQLTTIIGPNGAGKTTLLRAIMGLIPI---GQGQ 57 +LEVT+L YG + L SL VG GQ+ T+IGPNGAGK+T+L AIMG +PI G Sbjct: 4 ILEVTDLHVRYGKVEALHGASLKVGAGQIVTVIGPNGAGKSTMLGAIMGALPISGSANGV 63 Query: 58 VTLDGKVLNGMPTWEMSKVSMAMIPEGRMIFRAMSIEENLIVGAFAPQHRAHACQHFARR 117 V+ G L G+P + M ++PE R +F MS+E+NL++GA+ RR Sbjct: 64 VSYLGHNLAGLPVEKRVARGMCLVPEKRELFATMSVEDNLVLGAY-------------RR 110 Query: 118 EGLGDVVIRACARVKDNLERAYTMFPKLRERRRQLAGSLSGGEAQMLAMARGLMSEPKLL 177 + G+ D ++ Y +FP+L+ERRRQ AG+LSGGE QMLA+ R LM++P+LL Sbjct: 111 KRAGE------RNYLDQMDVVYQLFPRLKERRRQEAGTLSGGERQMLAVGRALMAKPQLL 164 Query: 178 IIDEPSLGLAPVVVNELFEILARLKAEGRTIILVEQNTERAVGVADHVYLMQGGKVILSQ 237 ++DEPSLGLAP++V E+F I++ L++ G +L+EQN A+ VAD+ Y+++ G + L Sbjct: 165 MLDEPSLGLAPLIVKEIFHIISNLRSTGVATLLIEQNARAALQVADYGYVLETGDMTLEG 224 Query: 238 KASEVALD 245 A E+A++ Sbjct: 225 PARELAVN 232 >FN1428 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Fnu Fusobacterium nucleatum Length = 237 Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 99/242 (40%), Positives = 152/242 (62%), Gaps = 20/242 (8%) Query: 1 MLEVTNLRAGYGAINVLWDVSLTVGQGQLTTIIGPNGAGKTTLLRAIMGLIPIGQGQVTL 60 MLEV +L+ Y I L +SL + +G++ +IIG NGAGKTT L+ I GLI G + Sbjct: 3 MLEVKDLQVFYDNIQALKGISLEINEGEVVSIIGANGAGKTTTLQTISGLITPKSGSIIF 62 Query: 61 DGKVLNGMPTWEMSKVSMAMIPEGRMIFRAMSIEENLIVGAFAPQHRAHACQHFARREGL 120 +GK L + K+ +A +PEGR IF +++++NL +G F + A Sbjct: 63 EGKNLLKEKAHNICKLGIAQVPEGRRIFSKLAVKDNLKLGQFTVKDSAE----------- 111 Query: 121 GDVVIRACARVKDNLERAYTMFPKLRERRRQLAGSLSGGEAQMLAMARGLMSEPKLLIID 180 + +++ Y +FP++ ER+ QLAG+LSGGE QMLAM R LMS PKLLI+D Sbjct: 112 ---------KKEEDRANFYKVFPRMSERKNQLAGTLSGGEQQMLAMGRALMSRPKLLILD 162 Query: 181 EPSLGLAPVVVNELFEILARLKAEGRTIILVEQNTERAVGVADHVYLMQGGKVILSQKAS 240 EPS+GL+P+ V E+FE++ +LK +G TI+LVEQN + A+ ++D Y+++ G+++L KA Sbjct: 163 EPSMGLSPLFVKEIFEVIKQLKEKGTTILLVEQNAKMALSISDRAYVIETGEIVLEGKAE 222 Query: 241 EV 242 ++ Sbjct: 223 DL 224 >SP0753 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Spn Streptococcus pneumoniae TIGR4 Length = 236 Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 94/243 (38%), Positives = 153/243 (62%), Gaps = 21/243 (8%) Query: 1 MLEVTNLRAGYGAINVLWDVSLTVGQGQLTTIIGPNGAGKTTLLRAIMGLIPIGQGQVTL 60 ML+V NL YG I + DVS V +G++ ++IG NGAGKTT+LR + GL+ G++ Sbjct: 3 MLKVENLSVHYGMIQAVRDVSFEVNEGEVVSLIGANGAGKTTILRTLSGLVRPSSGKIEF 62 Query: 61 DGKVLNGMPTWEMSKVSMAMIPEGRMIFRAMSIEENLIVGAFAPQHRAHACQHFARREGL 120 G+ + MP ++ ++ +PEGR +F +++ ENL +GAF ++R Sbjct: 63 LGQEIQKMPAQKIVASGLSQVPEGRHVFPGLTVMENLEMGAFLKKNREEN---------- 112 Query: 121 GDVVIRACARVKDNLERAYTMFPKLRERRRQLAGSLSGGEAQMLAMARGLMSEPKLLIID 180 + NL++ ++ FP+L ER+ Q A +LSGGE QMLAM R LMS PKLL++D Sbjct: 113 -----------QANLKKVFSRFPRLEERKNQDAATLSGGEQQMLAMGRALMSTPKLLLLD 161 Query: 181 EPSLGLAPVVVNELFEILARLKAEGRTIILVEQNTERAVGVADHVYLMQGGKVILSQKAS 240 EPS+GLAP+ + E+F+I+ ++ +G T++L+EQN +A+ ++D Y+++ G+++LS Sbjct: 162 EPSMGLAPIFIQEIFDIIQDIQKQGTTVLLIEQNANKALAISDRGYVLETGRIVLSGTGK 221 Query: 241 EVA 243 E+A Sbjct: 222 ELA 224