BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0185.p (303 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0448 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 371 e-102 AGl895 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 253 5e-67 SMc04882 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 229 5e-60 AGc4636 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 225 9e-59 BMEII0390 [K] COG0583 Transcriptional regulator Bme Brucella mel... 224 2e-58 >PA0448 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 302 Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust. Identities = 182/303 (60%), Positives = 227/303 (74%), Gaps = 1/303 (0%) Query: 1 MRRKIPSTQAMAVFESAARHQSFTKAAQEMAVTQSAVCRQVAALEEFLGLKLFRRTKRGV 60 MRRKIPST A+ FESAARH+SFTKAA+E+++TQSA+CRQ+A LEEFLG++LFRR++RGV Sbjct: 1 MRRKIPSTAALVSFESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGV 60 Query: 61 RLTEAGVSYSHQVGQRLDEIERDALHLMSRDGHGDTLELGVMPTFATRWLLPRLRSFLEA 120 +LTEAG+SYS +V RLD +ERD L +M G G +EL V+PTF T+WLLPRL+ F Sbjct: 61 KLTEAGLSYSRRVAVRLDAVERDTLAVMGHQG-GGAIELAVVPTFGTQWLLPRLKRFQRL 119 Query: 121 HPGVTVNLRPRTRPFLFEETNLDATLYAGQASWPGTEGVFLMRESMVAVASPELIGAGRK 180 HP VT+NL RTRPFLF +T DA LY G A W GT FLMRE+ V V SPEL+G R Sbjct: 120 HPEVTINLTNRTRPFLFADTEFDAALYFGDADWSGTVSHFLMRENPVPVCSPELLGGRRT 179 Query: 181 LTPTELLAYPLLQQSTRPYVWRQWFASFGMQVQNDLVGTQLELFSMLTQAAIVGMGVALI 240 L+ ++ PL+QQSTRPY WRQWF S G+ V +D+ G + ELFSML QAA+ GMGVALI Sbjct: 180 LSAEQVAGLPLMQQSTRPYAWRQWFHSQGLNVAHDMSGPRYELFSMLAQAAMHGMGVALI 239 Query: 241 PRFLIEDELRRGLLVVAVDHDYLSTHSYYLIYPERTSERPLLRLFQEWLEEQAKAYRLPS 300 P FLI+DEL G L+V + H YLS ++YYLI PER E +L F++WL E+A+ YR + Sbjct: 240 PPFLIQDELADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEEARQYREAN 299 Query: 301 GLG 303 GLG Sbjct: 300 GLG 302 >AGl895 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 306 Score = 253 bits (645), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 132/297 (44%), Positives = 182/297 (61%), Gaps = 4/297 (1%) Query: 2 RRKIPSTQAMAVFESAARHQSFTKAAQEMAVTQSAVCRQVAALEEFLGLKLFRRTKRGVR 61 R+ +PST A+A F+S AR SF+ AA E+A+TQ A+ RQV +LEE LG++LF R RGV Sbjct: 6 RKLLPSTSALAAFDSVARLGSFSAAADELALTQGAISRQVMSLEEQLGVRLFERGARGVS 65 Query: 62 LTEAGVSYSHQVGQRLDEIERDALHLMSRDGHGDTLELGVMPTFATRWLLPRLRSFLEAH 121 LT G +Y+ + L EI +L +M++ HG+TL L ++PTF TRWLLPR+ F+ H Sbjct: 66 LTTEGSAYAKSIAAALGEIRSASLQIMTKT-HGNTLNLAMLPTFGTRWLLPRIPDFVANH 124 Query: 122 PGVTVNLRPRTRPFLFEETNLDATLYAGQASWPGTEGVFLMRESMVAVASPELIGAGRKL 181 P +T+N R F FE LD ++ GQA WPG E FLM E + V SP+ + A Sbjct: 125 PEITINFATRIGQFDFEREQLDMAIHIGQADWPGAESTFLMHEMVAPVCSPQFLSAHPVE 184 Query: 182 TPTELLAYPLLQQSTRPYVWRQWFASFGMQVQNDLVGTQLELFSMLTQAAIVGMGVALIP 241 ++ A PLL ++RP W WF S G+ + G + E FS + QA I G+GVAL+P Sbjct: 185 KGEDIAALPLLHMASRPGAWGHWFESLGLSLALP-QGMRFEQFSSVAQACIAGLGVALMP 243 Query: 242 RFLIEDELRRGLLVVAVDHDYLSTHSYYLIYP-ERTSERPLLRLFQEWLEEQAKAYR 297 FLI++EL+ LV A DH S SYY + P R + P++ LF++WL Q +AYR Sbjct: 244 LFLIDNELKSKQLVKAFDHQARSPSSYYAVAPLSRANHAPVV-LFRDWLVRQVEAYR 299 >SMc04882 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 297 Score = 229 bits (584), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 118/291 (40%), Positives = 169/291 (58%) Query: 2 RRKIPSTQAMAVFESAARHQSFTKAAQEMAVTQSAVCRQVAALEEFLGLKLFRRTKRGVR 61 RR +P + FE AARH SFT+AA E+ +TQSAV RQ+ LE LG+ LF R ++ V Sbjct: 5 RRLVPDVTTLQAFECAARHGSFTQAAAELNLTQSAVSRQIKDLENQLGVLLFERVRQRVI 64 Query: 62 LTEAGVSYSHQVGQRLDEIERDALHLMSRDGHGDTLELGVMPTFATRWLLPRLRSFLEAH 121 L++AG + +V + L++ E + M+ +L + +PTF +RWL+PRL FL H Sbjct: 65 LSDAGQKFLPEVRRLLNQTEELMVRAMASARADSSLSIASLPTFGSRWLVPRLPDFLRRH 124 Query: 122 PGVTVNLRPRTRPFLFEETNLDATLYAGQASWPGTEGVFLMRESMVAVASPELIGAGRKL 181 PG VN+ R+ PF FEE N D ++ GQ W +L E +V ASP L+ Sbjct: 125 PGTVVNIASRSEPFDFEEQNFDLAIHYGQPVWARAICNYLCSEVIVPAASPALLSVHPVE 184 Query: 182 TPTELLAYPLLQQSTRPYVWRQWFASFGMQVQNDLVGTQLELFSMLTQAAIVGMGVALIP 241 P ++ PLL +TRP +W QWF + G++ G + + FSM+ +AA G+G AL+P Sbjct: 185 APADIGGAPLLHLATRPKLWAQWFEANGVEQDGAYRGNRFDQFSMVIEAATAGLGFALLP 244 Query: 242 RFLIEDELRRGLLVVAVDHDYLSTHSYYLIYPERTSERPLLRLFQEWLEEQ 292 R+LIE EL G L + +D + +SYYL PE E P+ R F+EW+ EQ Sbjct: 245 RYLIEQELTAGTLRIVLDRPMQTENSYYLAIPEGKLENPISRAFREWITEQ 295 >AGc4636 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 308 Score = 225 bits (574), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 130/304 (42%), Positives = 184/304 (60%), Gaps = 10/304 (3%) Query: 2 RRKIPSTQAMAVFESAARHQSFTKAAQEMAVTQSAVCRQVAALEEFLGLKLFRRTKRGVR 61 RR +PS +A FE+A+R S T AA+E+ +TQ AV RQ+ ALEE LG+ LF R ++ +R Sbjct: 6 RRFLPSLSLLAAFEAASRTGSVTAAARELGLTQGAVSRQILALEEQLGVALFLRERQTIR 65 Query: 62 LTEAGVSYSHQVGQRLDEIERDALHLMSRDGHGDTLELGVMPTFATRWLLPRLRSFLEAH 121 LT AG Y+ ++ + L I +L+L + + G TL LGV+P+F TRWL+PRL F+ H Sbjct: 66 LTRAGEGYAREIREALRRISTASLNLRA-NPDGGTLNLGVLPSFGTRWLVPRLPDFIARH 124 Query: 122 PGVTVNLRPRTRPFLFEETNLDATLYAGQASWPGTEGVFLMRESMVAVASP---ELIGAG 178 PG++VNL R+ F F +DA ++ G WPGTE FLM E ++ V SP EL G Sbjct: 125 PGISVNLLTRSSLFDFRTDTVDAAIHFGLPHWPGTELAFLMHEKVIPVCSPAFKELYGLS 184 Query: 179 RKLTPTELLAYPLLQQSTRPYVWRQWFASFGMQVQNDLVGTQLELFSMLTQAAIVGMGVA 238 R P +LL PLL +TRP W QWF S ++ N + G + F+ + +A+ G+G + Sbjct: 185 R---PDDLLHVPLLHMTTRPDAWEQWFRSHDVRFDN-VHGMLFDQFTTIAEASSAGVGAS 240 Query: 239 LIPRFLIEDELRRGLLVVAVDHDYLSTHSYYL-IYPERTSERPLLRLFQEWLEEQAKAYR 297 L+P F+IE+ELR G LV AV + S +YYL P+R + P L F+ W+ QA R Sbjct: 241 LVPSFMIEEELRSGRLVSAVAGEVESEEAYYLACMPDRATYPP-LESFRRWIVYQAAIGR 299 Query: 298 LPSG 301 +G Sbjct: 300 DVAG 303 >BMEII0390 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 310 Score = 224 bits (572), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 120/291 (41%), Positives = 172/291 (59%) Query: 2 RRKIPSTQAMAVFESAARHQSFTKAAQEMAVTQSAVCRQVAALEEFLGLKLFRRTKRGVR 61 RR IP + FE AARH SFT+AA E+ +TQSAV RQ+ LE LG+ LF R ++ + Sbjct: 5 RRLIPDIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRIL 64 Query: 62 LTEAGVSYSHQVGQRLDEIERDALHLMSRDGHGDTLELGVMPTFATRWLLPRLRSFLEAH 121 L++AG + +V + L++ E L M+ + + +PTF TRWL+PR+ F+E H Sbjct: 65 LSDAGRKFLPEVRRLLNQTEDTMLRAMASAQSTSSSSIATLPTFGTRWLMPRILDFVEKH 124 Query: 122 PGVTVNLRPRTRPFLFEETNLDATLYAGQASWPGTEGVFLMRESMVAVASPELIGAGRKL 181 PG+ +N+ R+ F FEE D ++ GQ W FL E +V VASP L+ R Sbjct: 125 PGIALNVASRSGVFDFEEQPFDLAIHYGQPVWAHATCTFLCSEVIVPVASPSLLKTRRPA 184 Query: 182 TPTELLAYPLLQQSTRPYVWRQWFASFGMQVQNDLVGTQLELFSMLTQAAIVGMGVALIP 241 +P EL PLL +TRP +W QWF S G++ Q+ G + E FSM+ AA+ G+G AL+P Sbjct: 185 SPEELENEPLLHLATRPKMWAQWFESCGVEGQSAYRGHRFEQFSMVIGAALAGLGFALLP 244 Query: 242 RFLIEDELRRGLLVVAVDHDYLSTHSYYLIYPERTSERPLLRLFQEWLEEQ 292 +LIE ELR G LV+ + + + YYL+ PE E PL ++F +W+ Q Sbjct: 245 LYLIEQELRSGELVLLFEKPMRTENEYYLVVPEGKLENPLTQVFCQWIAGQ 295