BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0177.p (284 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2708 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 255 7e-68 AGl412GM [K] COG0583 Transcriptional regulator Atu Agrobacterium... 173 5e-43 RSc1360 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 130 2e-30 RSp0997 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 125 1e-28 ygiP [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 110 4e-24 >RSc2708 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 374 Score = 255 bits (652), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 126/239 (52%), Positives = 170/239 (71%), Gaps = 8/239 (3%) Query: 25 GFALTDEGQRLVQEAMDILERIESITASVSRESDRGAGGNLANVSGSLRVVAPFGFGRRY 84 G + T+EGQRL++EA +L+R+ES+ VS G A VSG LR+VAPFGFGRRY Sbjct: 58 GVSFTEEGQRLLREATALLDRLESLPQQVS--------GQAAGVSGHLRIVAPFGFGRRY 109 Query: 85 VAPLIRDLHRSHPKLSISLLLAESPLAASTGADAIISIGRVKGSSWVGHFLAPNARFLCA 144 +AP++RDLHR PKL+I L L+++PLA +GAD +I IG + SSWVGH LAPN R LCA Sbjct: 110 IAPIVRDLHRDAPKLAIMLHLSDNPLAEMSGADIVIHIGEARDSSWVGHPLAPNERVLCA 169 Query: 145 APVLAKRMQRIKHPSDLAEYPYLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGALS 204 +P + I HP++LA P L LREND+D++R RFT + R + + V+++GALS Sbjct: 170 SPACLAGLPPITHPAELAHLPCLCLRENDEDVTRWRFTDTTADSGRARQVVNVRVSGALS 229 Query: 205 SNDGTITRDWALDGEGFVARSEWDCAHLVADGSLKRVLPGWQLDPAPIMALLPGRQGLT 263 SNDGT+ DWA DG G + RSEW+ A L++ G+L R+LPGW L PAP+MAL+P R+G++ Sbjct: 230 SNDGTVISDWAADGLGVMVRSEWEAAPLLSAGTLVRLLPGWALKPAPVMALVPTRKGVS 288 >AGl412GM [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 304 Score = 173 bits (438), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 99/259 (38%), Positives = 142/259 (54%), Gaps = 15/259 (5%) Query: 26 FALTDEGQRLVQEAMDILERIESITASVSRESDRGAGGNLANVSGSLRVVAPFGFGRRYV 85 LT+EGQ L Q ++IL +E +T + V+G L+V APFGFGR Y+ Sbjct: 56 LHLTEEGQLLAQRGVEILTNMEEMTEQLLERRQ--------VVTGHLQVAAPFGFGRLYI 107 Query: 86 APLIRDLHRSHPKLSISLLLAESPLAASTGA-DAIISIGRVKGSSWVGHFLAPNARFLCA 144 AP + L HP++ ++L L E P++ + A + +I +G + SS + H LAPN R LCA Sbjct: 108 APAMAQLREQHPEVKLTLSLFEDPVSLRSDAWNVLIHVGPLTDSSLIVHRLAPNRRILCA 167 Query: 145 APVLAKRMQRIKHPSDLAEYPYLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGALS 204 AP +R P L ++ +RE+ D++ RF+ + LT+++ A+S Sbjct: 168 APSYLERHGVPDRPETLNQHACAVIREDHADVTLWRFS------HQEKPPLTLRIQPAMS 221 Query: 205 SNDGTITRDWALDGEGFVARSEWDCAHLVADGSLKRVLPGWQLDPAPIMALLPGRQGLTL 264 SNDG + + WAL G G + RSEWD A + G L +LP WQL A ++ALL R G Sbjct: 222 SNDGEVIKQWALAGLGIIIRSEWDVAEDLRRGRLVALLPDWQLPDADVVALLDNRSGRVA 281 Query: 265 RQRVFLDAAKRAFQPVPWR 283 R FL K+ FQPVPWR Sbjct: 282 RTVCFLQILKQQFQPVPWR 300 >RSc1360 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 309 Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/261 (34%), Positives = 130/261 (49%), Gaps = 17/261 (6%) Query: 26 FALTDEGQRLVQEAMDILERIESITASVSRESDRGAGGNLANVSGSLRVVAPFGFGRRYV 85 LT EG +++ IL + + ASVS AGG SG LRV AP GFGRR+V Sbjct: 56 ITLTFEGSAFLEDCQRILNDLHNAEASVS------AGG--VKASGHLRVTAPAGFGRRHV 107 Query: 86 APLIRDLHRSHPKLSISLLLAESPL-AASTGADAIISIGRVKGSSWVGHFLAPNARFLCA 144 AP++ D +HP +SI+L L + + + G D I +G + SS V L N R + A Sbjct: 108 APMVPDFLAAHPDVSITLDLGDRIVDLVNEGFDCAIRLGDLPDSSLVSIRLWENRRVVVA 167 Query: 145 APVLAKRMQRIKHPSDLAEYPYLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGALS 204 AP +R R + LA + L+ + + F ++ GK +TVK+ G + Sbjct: 168 APAYLERRGRPEQLEQLAGHNCLAFGASANVQRGWVF-------QQGGKTVTVKVGGTME 220 Query: 205 SNDGTITRDWALDGEGFVARSEWDCAHLVADGSLKRVLPGWQLDPAPIMALLPGRQGLTL 264 DG + R+W L G G RS W+ H +A G L VL ++ P I A+ P R+ L L Sbjct: 221 CTDGAVLREWCLQGHGLAWRSWWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQRKHLPL 280 Query: 265 RQRVFLDAAKRAF-QPVPWRR 284 R R+ +D K + P WRR Sbjct: 281 RVRLLIDFLKNTYGNPAYWRR 301 >RSp0997 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 306 Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 122/247 (49%), Gaps = 12/247 (4%) Query: 26 FALTDEGQRLVQEAMDILERIESITASVSRESDRGAGGNLANVSGSLRVVAPFGFGRRYV 85 +LT EG+ ++ A IL I+ + +++ R G LRV A GFGRR++ Sbjct: 60 MSLTPEGEVFLEHARRILGEIDDLDQLLTQAKGRP--------RGLLRVNATLGFGRRHI 111 Query: 86 APLIRDLHRSHPKLSISL-LLAESPLAASTGADAIISIGRVKGSSWVGHFLAPNARFLCA 144 AP I + R +P + + L L A+ P D I G + + +APN R LCA Sbjct: 112 APAISEYVRQYPGVDVQLQLTADPPPLNEDAFDVCIRFGEPPDARIIARKVAPNRRLLCA 171 Query: 145 APVLAKRMQRIKHPSDLAEYPYLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGALS 204 AP +R P+DLA + + +R+ D R T RRT TV + G L+ Sbjct: 172 APDYLRRHGTPLAPADLARHNCIGIRQGSDAYGVWRLTSGKGTKRRTE---TVHVRGNLT 228 Query: 205 SNDGTITRDWALDGEGFVARSEWDCAHLVADGSLKRVLPGWQLDPAPIMALLPGRQGLTL 264 +NDG I +WAL+G G V R++WD + G L +VLP + A I A+ R L+ Sbjct: 229 TNDGEIAVNWALEGHGIVMRAQWDVERYLRGGQLVQVLPLYATPEADIYAVYLQRHQLSP 288 Query: 265 RQRVFLD 271 R R+F++ Sbjct: 289 RIRLFVE 295 >ygiP [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 310 Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 111/223 (49%), Gaps = 18/223 (8%) Query: 25 GFALTDEGQRLVQEAMDILERIESITASVSRESDRGAGGNLANVSGSLRVVAPFGFGRRY 84 G ALT+ GQR + A++IL + + + V++ R G +R+ FGFGR + Sbjct: 59 GVALTESGQRCYEHALEILTQYQRLVDDVTQIKTRP--------EGMIRIGCSFGFGRSH 110 Query: 85 VAPLIRDLHRSHPKLSISLLLAESPL-AASTGADAIISIGRVKGSSWVGHFLAPNARFLC 143 +AP I +L R++P+L + L + + D I I ++ H L N R LC Sbjct: 111 IAPAITELMRNYPELQVHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILC 170 Query: 144 AAPVLAKRMQRIKHPSDLAEYP-YLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGA 202 AAP + +Q+ P L E + L + D++ + + +++ VK++G Sbjct: 171 AAP---EYLQKYPQPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKS-----VKVSGH 222 Query: 203 LSSNDGTITRDWALDGEGFVARSEWDCAHLVADGSLKRVLPGW 245 LSSN G I WAL+G+G + RSEWD + G L +VLP + Sbjct: 223 LSSNSGEIVLQWALEGKGIMLRSEWDVLPFLESGKLVQVLPEY 265