BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0148.p (252 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0235 [GEPR] COG0477 Permeases of the major facilitator superfa... 167 2e-41 RSp0896 [GEPR] COG0477 Permeases of the major facilitator superf... 165 9e-41 RSc1093 [GEPR] COG0477 Permeases of the major facilitator superf... 165 1e-40 Z3394 [GEPR] COG0477 Permeases of the major facilitator superfam... 139 6e-33 ECs3031 [GEPR] COG0477 Permeases of the major facilitator superf... 139 6e-33 >PA0235 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae Pseudomonas aeruginosa Length = 448 Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 100/243 (41%), Positives = 148/243 (60%), Gaps = 3/243 (1%) Query: 8 ALPTVHVDQVVEQGRFGTFQFGLLLLCGLCLIIDGFDVQAMGYVAPAIIADWGVSKASLG 67 A+ + V + +Q+ ++LLC L + +DG D AMG++APA+ DWG+ +ASLG Sbjct: 8 AVERLDVQAFINAQPLSPYQWRIVLLCFLIVFLDGLDTAAMGFIAPALTQDWGIDRASLG 67 Query: 68 PVFGAGLFGMLLGSLVLTPVGDRYGRRPVLIASTLFFAVCMLVTPLVTTIDQLLIVRFIT 127 PV A L GM+ G+L P+ DRYGR+ VL+A+ F + L + T ++QLL +RF+T Sbjct: 68 PVMSAALIGMVFGALGSGPLADRYGRKLVLVAAVFLFGLFSLASAYSTNVEQLLALRFLT 127 Query: 128 GFGLGSIMPNAMALVGEYSPSSSRVTRMMLVSCGFTVGAAAGGFVSAALIPAHGWHAVFW 187 G GLG+ MPNA L+ EY+P + + + CGF +G A GGFVSA LIP GWH++ Sbjct: 128 GLGLGAAMPNATTLLSEYTPERLKSLLVTSMFCGFNLGMACGGFVSAKLIPLFGWHSLLL 187 Query: 188 VGGAVPLVLGLAMLVWLPESIQFLVLHRR--ARSHSLHAGCA-SSIPLSASMTRPRSWSR 244 +GG +PLVL + +L LPES ++LV+ R R + A A + + L+ S P + Sbjct: 188 LGGLLPLVLAVVLLFRLPESARYLVVRNRGSERVRQVLAPIAPAQVALARSFHVPEQQTV 247 Query: 245 KAR 247 +AR Sbjct: 248 QAR 250 >RSp0896 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso Ralstonia solanacearum Length = 458 Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 91/209 (43%), Positives = 129/209 (61%) Query: 3 IHASGALPTVHVDQVVEQGRFGTFQFGLLLLCGLCLIIDGFDVQAMGYVAPAIIADWGVS 62 ++A A V V +V++ R +Q +L LC ++DGFD A+GY+APA+ W ++ Sbjct: 1 MNALPARADVPVREVIDGSRLSAYQGLVLALCFAAAMLDGFDTAAIGYIAPALREAWHLT 60 Query: 63 KASLGPVFGAGLFGMLLGSLVLTPVGDRYGRRPVLIASTLFFAVCMLVTPLVTTIDQLLI 122 L P FGAGLFG++LGS+ L PV DR+GR+PVL+ S L F V L +++ L++ Sbjct: 61 PPQLAPAFGAGLFGLMLGSMGLGPVADRFGRKPVLLMSVLVFGVATLACAASDSLNTLVM 120 Query: 123 VRFITGFGLGSIMPNAMALVGEYSPSSSRVTRMMLVSCGFTVGAAAGGFVSAALIPAHGW 182 +RF+TG GLG MP + L EYSP R+ + L GFT G A GG V+A ++P +GW Sbjct: 121 LRFLTGLGLGGAMPICITLSAEYSPQRHRMLLVTLSWSGFTSGLALGGLVAAEILPVYGW 180 Query: 183 HAVFWVGGAVPLVLGLAMLVWLPESIQFL 211 V GG PLVL + +W+PES+QFL Sbjct: 181 RGVLVAGGVTPLVLLPVLALWMPESVQFL 209 >RSc1093 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso Ralstonia solanacearum Length = 454 Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 82/203 (40%), Positives = 127/203 (62%) Query: 10 PTVHVDQVVEQGRFGTFQFGLLLLCGLCLIIDGFDVQAMGYVAPAIIADWGVSKASLGPV 69 P + V +++ RF FQ+ ++LLC + IDGFD +G++APA+ DW + A LG V Sbjct: 6 PVIDVRAWLDRQRFSAFQWSVVLLCFFVVAIDGFDTACVGFIAPALAQDWHIGPAVLGTV 65 Query: 70 FGAGLFGMLLGSLVLTPVGDRYGRRPVLIASTLFFAVCMLVTPLVTTIDQLLIVRFITGF 129 F AGL G+++G+L+ P+ DR GR+ L+ + F + +++ ++ L+ +RF+TG Sbjct: 66 FSAGLAGLMVGALIFGPLADRIGRKQTLLFTVGAFGLASVLSAFAPSVGALVALRFLTGL 125 Query: 130 GLGSIMPNAMALVGEYSPSSSRVTRMMLVSCGFTVGAAAGGFVSAALIPAHGWHAVFWVG 189 GLG MPNA+AL EY P R ++ CGFT+G+ GG V+A L+P GW +V G Sbjct: 126 GLGGAMPNAIALTSEYCPERRRAFLTTVMFCGFTLGSGFGGIVAAQLVPEFGWRSVLLFG 185 Query: 190 GAVPLVLGLAMLVWLPESIQFLV 212 G +PL+L M+ LPES+++LV Sbjct: 186 GVIPLLLLPVMVFALPESVRYLV 208 >Z3394 [GEPR] COG0477 Permeases of the major facilitator superfamily EcZ Escherichia coli O157:H7 EDL933 Length = 452 Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 81/218 (37%), Positives = 129/218 (59%), Gaps = 2/218 (0%) Query: 13 HVDQVVEQGRFGTFQFGLLLLCGLCLIIDGFDVQAMGYVAPAIIADWGVSKASLGPVFGA 72 + +++ G Q+ +++ C L +++DGFD A+G++AP I W ++ L P+FGA Sbjct: 6 DLQALIDAAPVGKMQWRVIICCFLVVMLDGFDTAAIGFIAPDIRTHWQLTAGDLSPLFGA 65 Query: 73 GLFGMLLGSLVLTPVGDRYGRRPVLIASTLFFAVCMLVTPLVTTIDQLLIVRFITGFGLG 132 GL + G+L+ P+ DR+GR+ V+ F L + + L+ +RF+TG GLG Sbjct: 66 GLLXLTAGALLCGPLSDRFGRKRVIELCVFLFGALSLASAFSPDLQTLVFLRFLTGLGLG 125 Query: 133 SIMPNAMALVGEYSPSSSRVTRMMLVSCGFTVGAAAGGFVSAALIPAHGWHAVFWVGGAV 192 MPN + + EY P+ R + L+ CGFT+G+A GG VSA L+P GWH + +GG + Sbjct: 126 GAMPNTITMTSEYLPARRRGALVTLMFCGFTLGSAFGGIVSAQLVPVIGWHGILVLGGVL 185 Query: 193 PLVLGLAMLVWLPESIQFLVLHRRARSHSLHAGCASSI 230 PL+L +A+LV LPES ++ V RR ++ A S+I Sbjct: 186 PLMLFVALLVVLPESPRWQV--RRQLPQAVIAKTVSAI 221 >ECs3031 [GEPR] COG0477 Permeases of the major facilitator superfamily Ecs Escherichia coli O157:H7 Length = 452 Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 130/218 (59%), Gaps = 2/218 (0%) Query: 13 HVDQVVEQGRFGTFQFGLLLLCGLCLIIDGFDVQAMGYVAPAIIADWGVSKASLGPVFGA 72 + +++ G Q+ +++ C L +++DGFD A+G++AP I W ++ L P+FGA Sbjct: 6 DLQALIDAAPVGKMQWRVIICCFLVVMLDGFDTAAIGFIAPDIRTHWQLTAGDLAPLFGA 65 Query: 73 GLFGMLLGSLVLTPVGDRYGRRPVLIASTLFFAVCMLVTPLVTTIDQLLIVRFITGFGLG 132 GL G+ G+L+ P+ DR+GR+ V+ F L + + L+ +RF+TG GLG Sbjct: 66 GLLGLTAGALLCGPLSDRFGRKRVIELCVFLFGALSLASAFSPDLQTLVFLRFLTGLGLG 125 Query: 133 SIMPNAMALVGEYSPSSSRVTRMMLVSCGFTVGAAAGGFVSAALIPAHGWHAVFWVGGAV 192 MPN + + EY P+ R + L+ CGFT+G+A GG VSA L+P GWH + +GG + Sbjct: 126 GAMPNTITMTSEYLPARRRGALVTLMFCGFTLGSAFGGIVSAQLVPVIGWHGILVLGGVL 185 Query: 193 PLVLGLAMLVWLPESIQFLVLHRRARSHSLHAGCASSI 230 PL+L +A+LV LPES ++ V RR ++ A S+I Sbjct: 186 PLMLFVALLVVLPESPRWQV--RRQLPQAVIAKTVSAI 221