BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0129.p (315 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0940 [R] COG1162 Predicted GTPases Rso Ralstonia solanacearum 346 4e-95 NMB0263 [R] COG1162 Predicted GTPases Nme Neisseria meningitidis... 239 4e-63 NMA2224 [R] COG1162 Predicted GTPases NmA Neisseria meningitidis... 236 6e-62 HI1714 [R] COG1162 Predicted GTPases Hin Haemophilus influenzae 197 2e-50 YPO0365 [R] COG1162 Predicted GTPases Ype Yersinia pestis 191 2e-48 >RSc0940 [R] COG1162 Predicted GTPases Rso Ralstonia solanacearum Length = 318 Score = 346 bits (887), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 176/311 (56%), Positives = 219/311 (70%), Gaps = 6/311 (1%) Query: 8 ARSARAGSATNKAEL-EQGLVIAAHGRHYLVQ-AGEQKLNCVTRGKKSDVAVGDHIRLAR 65 + RAG A E GLVIAAHGRHYLV+ G L C RGK+S+ AVGD + Sbjct: 4 GKPGRAGHDRRHASTGEHGLVIAAHGRHYLVERKGGGLLQCFPRGKRSECAVGDRVIFEA 63 Query: 66 TSADQGVVESIDERRTLLYRSDQYKSKLLAANVDQLFIVVATEPSFSDDLVSRSLVAAES 125 T+ DQGVV ++ERR LL+RSDQ+KSK LAAN+DQ+ I++ TEP FS+DL+ R+LVAAES Sbjct: 64 TAVDQGVVVRVEERRNLLHRSDQFKSKQLAANIDQVLIMLGTEPGFSEDLLGRALVAAES 123 Query: 126 AGVSAHLILNKTDITEALPKTRERLQVYARLGYPVHEVSAKAQPEETRAAFMPLLAGKST 185 G++ ++LNK D+T L R RL +Y LGY V E+S A PE A +AG+S+ Sbjct: 124 LGITPLILLNKIDLTARLETARARLALYRALGYAVVELSVHAAPEAAHAVLAAHVAGRSS 183 Query: 186 ILIGQSGMGKSSIINLIVPDADIATREISAALDTGKHTTTFTRLYQME----QEASIIDS 241 ILIGQSGMGKSS++NL++P D TREIS LD+GKHTTTFTRLY + ++IDS Sbjct: 184 ILIGQSGMGKSSLLNLLIPGVDAQTREISEKLDSGKHTTTFTRLYHLPSGWGHGGTLIDS 243 Query: 242 PGFQEFGLYQLSEGMLERAFRDFTPYLGKCRFYNCHHLNEPGCAVLEAVQAGEIAGMRHQ 301 PGFQEFGL+ L+EGMLERAF +F P L +CRFYNC HL EPGC +L A+ G+I RH Sbjct: 244 PGFQEFGLHHLTEGMLERAFPEFRPRLTECRFYNCRHLQEPGCGILGAMAEGKIDPRRHA 303 Query: 302 LYAQLVHESSQ 312 LYAQL+HES Q Sbjct: 304 LYAQLLHESEQ 314 >NMB0263 [R] COG1162 Predicted GTPases Nme Neisseria meningitidis MC58 Length = 307 Score = 239 bits (611), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 127/268 (47%), Positives = 169/268 (63%), Gaps = 6/268 (2%) Query: 27 VIAAHGRHYLVQAGE-QKLNCVTRGKKSDVAVGDHIRLARTSADQGVVESIDERRTLLYR 85 + A++GR Y+V+ + TR K+ D A GD +R++ +A+Q V+E R++LLYR Sbjct: 26 ITASYGRRYIVRTPDGTTYEASTRKKRVDFACGDRVRISPVNAEQVVIEDFLPRQSLLYR 85 Query: 86 SDQYKSKLLAANVDQLFIVVATEPSFSDDLVSRSLVAAESAGVSAHLILNKTDITEALPK 145 D +K+KL+AANV QL IV A PS S L+ R+L+AAE+AG+ A ++LNK D+ E Sbjct: 86 QDAWKTKLIAANVTQLLIVTAAVPSPSVRLLQRALLAAEAAGIEAVIVLNKADLPETA-L 144 Query: 146 TRERLQVYARLGYPVHEVSAKAQPEETRAAFMPLLAGKSTILIGQSGMGKSSIINLIVPD 205 RE+L+ Y LGYPV E A E + P L G S IL+GQSGMGKS++ N ++ Sbjct: 145 WREKLKFYETLGYPVIETRAL----ENAGSLRPALQGHSNILLGQSGMGKSTLTNALLGS 200 Query: 206 ADIATREISAALDTGKHTTTFTRLYQMEQEASIIDSPGFQEFGLYQLSEGMLERAFRDFT 265 T +ISAALD+GKHTTT RLY + E +IDSPG QEFGL+ L L R F DF Sbjct: 201 QTARTGDISAALDSGKHTTTHARLYDLNGETQLIDSPGLQEFGLHHLQAADLPRYFPDFR 260 Query: 266 PYLGKCRFYNCHHLNEPGCAVLEAVQAG 293 +G+CRF+NC H EPGCA A Q G Sbjct: 261 HLVGQCRFHNCTHRAEPGCAFKAAAQTG 288 >NMA2224 [R] COG1162 Predicted GTPases NmA Neisseria meningitidis Z2491 Length = 307 Score = 236 bits (601), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 125/266 (46%), Positives = 168/266 (63%), Gaps = 6/266 (2%) Query: 27 VIAAHGRHYLVQAGE-QKLNCVTRGKKSDVAVGDHIRLARTSADQGVVESIDERRTLLYR 85 + A++GR Y+V+ + TR K+ D A GD +R++ +A+Q V+E R++LLYR Sbjct: 26 ITASYGRRYIVRTPDGTTYEASTRKKRVDFACGDRVRISPVNAEQVVIEDFLPRQSLLYR 85 Query: 86 SDQYKSKLLAANVDQLFIVVATEPSFSDDLVSRSLVAAESAGVSAHLILNKTDITEALPK 145 D +K+KL+AANV QL IV A PS S L+ R+L+AAE+AG+ A ++LNK D+ E Sbjct: 86 QDAWKTKLIAANVTQLLIVTAAVPSPSVRLLQRALLAAEAAGIRAVIVLNKADLPETA-L 144 Query: 146 TRERLQVYARLGYPVHEVSAKAQPEETRAAFMPLLAGKSTILIGQSGMGKSSIINLIVPD 205 RE+L+ Y LGYPV E A E + P L G S IL+GQSGMGKS++ N ++ Sbjct: 145 WREKLKFYETLGYPVIETRAL----ENAGSLRPALQGHSNILLGQSGMGKSTLTNALLGS 200 Query: 206 ADIATREISAALDTGKHTTTFTRLYQMEQEASIIDSPGFQEFGLYQLSEGMLERAFRDFT 265 T +ISAALD+GKHTTT RLY + E +IDSPG QEFGL+ L L R F DF Sbjct: 201 QTARTGDISAALDSGKHTTTHARLYDLNGETQLIDSPGLQEFGLHHLQAADLPRYFPDFR 260 Query: 266 PYLGKCRFYNCHHLNEPGCAVLEAVQ 291 +G+CRF+NC H EPGCA A + Sbjct: 261 HLVGQCRFHNCTHRAEPGCAFKAAAE 286 >HI1714 [R] COG1162 Predicted GTPases Hin Haemophilus influenzae Length = 346 Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 179/303 (59%), Gaps = 12/303 (3%) Query: 20 AELEQGLVIAAHGRHYLVQAGEQKL-NCVTRGKKSDVAVGDHIRLARTSADQ-----GVV 73 E ++G+V+ + H V+ + ++ C R S + VGD + + R +Q GV+ Sbjct: 38 GESQEGVVVTRYSIHADVENEQGEIYRCNLRRTLSSLVVGDKV-VWRKGNEQLQGVSGVI 96 Query: 74 ESIDERRTLLYRSDQYKS-KLLAANVDQLFIVVATEPSFSDDLVSRSLVAAESAGVSAHL 132 E+I R + R D Y K +AAN+D++ IV A P+ S +++ R LV E AG++ + Sbjct: 97 EAIHPRENEISRPDYYDGLKPIAANIDRIIIVSAVLPTLSLNIIDRYLVVCEIAGITPLI 156 Query: 133 ILNKTDI--TEALPKTRERLQVYARLGYPVHEVSAKAQPEETRAAFMPLLAGKSTILIGQ 190 +LNK D+ E + ++L++Y +GY + +SAK+ E LLA + I +GQ Sbjct: 157 VLNKVDLLAQEQRQEIEDQLKIYQDIGYEILMISAKSG--ENMEKLTALLAQGTAIFVGQ 214 Query: 191 SGMGKSSIINLIVPDADIATREISAALDTGKHTTTFTRLYQMEQEASIIDSPGFQEFGLY 250 SG+GKSS+IN I+P + ++S G+HTTT +RLY + Q ++IDSPG +EFGL+ Sbjct: 215 SGVGKSSLINHILPSVNAQVGDVSETSGLGQHTTTSSRLYHLPQGGNLIDSPGIREFGLW 274 Query: 251 QLSEGMLERAFRDFTPYLGKCRFYNCHHLNEPGCAVLEAVQAGEIAGMRHQLYAQLVHES 310 L + + +R+F LG C+F +C HL++PGCA+ EAV+ G+I+ +R+ Y +L+ Sbjct: 275 HLDAEQITKGYREFQYVLGTCKFRDCKHLSDPGCALREAVEQGKISPVRYDNYHRLIESL 334 Query: 311 SQT 313 S+T Sbjct: 335 SET 337 >YPO0365 [R] COG1162 Predicted GTPases Ype Yersinia pestis Length = 350 Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 115/307 (37%), Positives = 175/307 (57%), Gaps = 18/307 (5%) Query: 20 AELEQGLVIAAHGRHYLVQA--GEQKLNCVTRGKKSDVAVGDHIRLARTSAD-------Q 70 + ++G+VI+ G+H V+A G Q + R KS + GD + + R + Sbjct: 36 GDAQEGIVISRFGQHADVEAVDGTQHRCNIRRTIKS-LVTGDRV-VWRPGLQAQEGVRVK 93 Query: 71 GVVESIDERRTLLYRSDQYKS-KLLAANVDQLFIVVATEPSFSDDLVSRSLVAAESAGVS 129 G+VE++ ER ++L R D Y K +AAN+DQ+ IV A P S +++ R LVA E+ V Sbjct: 94 GIVEAVHERTSVLTRPDLYDGVKPIAANIDQIVIVSAILPELSLNIIDRYLVACETLEVE 153 Query: 130 AHLILNKTDITEALPK--TRERLQVYARLGYPVHEVSAKAQPEETRAAFMPLLAGKSTIL 187 ++LNK D+ +A + + +Y R+GY V EVS+ Q E AF L G+ +I Sbjct: 154 PLIVLNKIDLLDADGRKFVDGMMDIYRRIGYDVLEVSS--QTREGMEAFENALTGRISIF 211 Query: 188 IGQSGMGKSSIINLIVP--DADIATREISAALDTGKHTTTFTRLYQMEQEASIIDSPGFQ 245 GQSG+GKSS++N ++P D +I +S G+HTTT RLY + +IDSPG + Sbjct: 212 AGQSGVGKSSLLNALLPPTDNEILVNTVSGNSGLGQHTTTAARLYHFQHGGDVIDSPGVR 271 Query: 246 EFGLYQLSEGMLERAFRDFTPYLGKCRFYNCHHLNEPGCAVLEAVQAGEIAGMRHQLYAQ 305 EFGL+ L+ + + F +F YLG C+F +C H N+PGCA+ EAV+ G+IA R Y + Sbjct: 272 EFGLWHLAPEQITQGFVEFRDYLGHCKFRDCSHTNDPGCALREAVEQGKIAEERFDNYHR 331 Query: 306 LVHESSQ 312 ++ Q Sbjct: 332 ILESMEQ 338