BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0126.p         (48 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0942 Non COG                                                        84   6e-17
YPO0366 [A] COG1949 Oligoribonuclease (3'->5' exoribonuclease) Y...    71   5e-13
STM4350 [A] COG1949 Oligoribonuclease (3'->5' exoribonuclease) S...    70   8e-13
HI1715 [A] COG1949 Oligoribonuclease (3'->5' exoribonuclease) Hi...    70   9e-13
Zorn [A] COG1949 Oligoribonuclease (3'->5' exoribonuclease) EcZ ...    70   1e-12

>RSc0942 Non COG
          Length = 219

 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query: 1   VSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELKYYREHFIKE 48
           VSTLKELCKRW+P IA GF KRQ HTA ADI+ESIEEL+YYR+HFI++
Sbjct: 156 VSTLKELCKRWQPAIAKGFIKRQQHTAYADIVESIEELRYYRQHFIRD 203


>YPO0366 [A] COG1949 Oligoribonuclease (3'->5' exoribonuclease) Ype Yersinia
           pestis
          Length = 181

 Score = 71.2 bits (173), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 37/47 (78%)

Query: 1   VSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELKYYREHFIK 47
           VSTLKEL +RWKPEI  GFKK+  H AL DI ES+ EL YYREHFI+
Sbjct: 134 VSTLKELARRWKPEILAGFKKQNTHQALDDIRESVAELAYYREHFIQ 180


>STM4350 [A] COG1949 Oligoribonuclease (3'->5' exoribonuclease) Sty
           Salmonella typhimurium LT2
          Length = 181

 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 36/47 (76%)

Query: 1   VSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELKYYREHFIK 47
           VSTLKEL +RWKPEI  GF K+  H A+ DI ES+ EL YYREHFIK
Sbjct: 134 VSTLKELARRWKPEILAGFTKQGTHQAMDDIRESVAELAYYREHFIK 180


>HI1715 [A] COG1949 Oligoribonuclease (3'->5' exoribonuclease) Hin
           Haemophilus influenzae
          Length = 182

 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 36/47 (76%)

Query: 1   VSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELKYYREHFIK 47
           VSTLKEL  RWKPEI  GFKK   H AL DI ESI+EL YYREHF+K
Sbjct: 134 VSTLKELAARWKPEILEGFKKENTHLALDDIRESIKELAYYREHFMK 180


>Zorn [A] COG1949 Oligoribonuclease (3'->5' exoribonuclease) EcZ
           Escherichia coli O157:H7 EDL933
          Length = 204

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 36/47 (76%)

Query: 1   VSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELKYYREHFIK 47
           VSTLKEL +RWKPEI  GF K+  H A+ DI ES+ EL YYREHFIK
Sbjct: 157 VSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIK 203