BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0106.p         (139 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2414 [L] COG2927 DNA polymerase III, chi subunit Rso Ralstoni...   135   2e-32
PA3832 [L] COG2927 DNA polymerase III, chi subunit Pae Pseudomon...    91   6e-19
XF0136 [L] COG2927 DNA polymerase III, chi subunit Xfa Xylella f...    72   3e-13
HI1397 [L] COG2927 DNA polymerase III, chi subunit Hin Haemophil...    64   8e-11
NMB1568 [L] COG2927 DNA polymerase III, chi subunit Nme Neisseri...    64   1e-10

>RSc2414 [L] COG2927 DNA polymerase III, chi subunit Rso Ralstonia
           solanacearum
          Length = 142

 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/139 (56%), Positives = 100/139 (71%), Gaps = 5/139 (3%)

Query: 1   MTRIDFHSNVPQKIAYVCRLVRKARASGATLVLRTPDRAELQQLDQALWSFSEQDFLPHV 60
           MTR+DFHSNVP K+AY CRLVRKA  +G  +++   +RA L+  D  LW+FS+ DFLPH 
Sbjct: 1   MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIV-VGNRAALEAFDAQLWTFSQLDFLPHC 59

Query: 61  MAGDPLAAQTPIILTADDSA---DLPHHQILINLGSDTPAHFARFERLLEIISADDADKA 117
                LAAQTPI+L AD S    D PHH IL+NL   TP  FARF RL+EI+  D+A++A
Sbjct: 60  GLRHRLAAQTPILL-ADASEPLDDAPHHDILVNLSDATPPLFARFARLIEIVGDDEAERA 118

Query: 118 AGRDRYRFYKERGYPLSHH 136
           A RDR+RFY++RGYP+ HH
Sbjct: 119 AARDRFRFYRDRGYPIQHH 137


>PA3832 [L] COG2927 DNA polymerase III, chi subunit Pae Pseudomonas
           aeruginosa
          Length = 142

 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 76/140 (54%), Gaps = 7/140 (5%)

Query: 1   MTRIDFH----SNVPQKIAYVCRLVRKARASGATLVLRTPDRAELQQLDQALWSFSEQDF 56
           MTR+DF+    ++   ++   CRL  KA   G  + L   D A+  +LD  LWSF  + F
Sbjct: 1   MTRVDFYVIPSADPSARLQVACRLAEKAWRQGMQVYLHCADEAQRSELDGRLWSFRGEAF 60

Query: 57  LPHVMAGDPLAAQTPIILTADDSADLPHHQILINLGSDTPAHFARFERLLEIISADDADK 116
           +PH +A +   A+ P+ L   +     H  +LINL  + P     F R+ E++  + A +
Sbjct: 61  IPHSLAEE--DAEAPVALGLGEPPG-NHRDLLINLTLEAPGFVPNFSRVAELVVEEPAIR 117

Query: 117 AAGRDRYRFYKERGYPLSHH 136
            A RD++RFY+E+GYPL  H
Sbjct: 118 QAARDKFRFYREQGYPLQDH 137


>XF0136 [L] COG2927 DNA polymerase III, chi subunit Xfa Xylella fastidiosa
           9a5c
          Length = 141

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 9/142 (6%)

Query: 1   MTRIDFH-----SNVPQKIAYVCRLVRKARASGATLVLRTPDRAELQQLDQALWSFSEQD 55
           M R DF+       + Q +  VC LVRKA  +    ++   D+A+ + LD  LW+F    
Sbjct: 1   MARADFYLIAKPRFLQQPLELVCALVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDA 60

Query: 56  FLPHVMAG-DPLAAQTPIILTADDSADLPHHQILINLGSDTPAHFARFERLLEIISADDA 114
           ++PH +AG D     TP+++   DS D P   ++INL  D P      ER+LE++ AD A
Sbjct: 61  YIPHQIAGSDEDDDITPVLIATPDS-DTPSRPLVINL-RDAPWD-GPCERVLEVVPADPA 117

Query: 115 DKAAGRDRYRFYKERGYPLSHH 136
            +   R+R++ YK RG  ++ H
Sbjct: 118 AREPLRERWKHYKARGLHMNKH 139


>HI1397 [L] COG2927 DNA polymerase III, chi subunit Hin Haemophilus
           influenzae
          Length = 144

 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 59/117 (50%)

Query: 18  CRLVRKARASGATLVLRTPDRAELQQLDQALWSFSEQDFLPHVMAGDPLAAQTPIILTAD 77
           C L      SG  +++     A+  ++D+ LW     +F+PH ++G+     TPI ++  
Sbjct: 23  CNLAASIWRSGKKVLISCESEAQALEIDERLWQRDPNEFVPHNLSGEATQYPTPIEISWL 82

Query: 78  DSADLPHHQILINLGSDTPAHFARFERLLEIISADDADKAAGRDRYRFYKERGYPLS 134
              +L    +LINL  + P     F ++++ +  DDA K   R+RY+  + +G+ LS
Sbjct: 83  GKRNLQRRDLLINLQQEIPDFSHSFTQIIDFVPKDDALKTQARERYKQLRLQGWNLS 139


>NMB1568 [L] COG2927 DNA polymerase III, chi subunit Nme Neisseria
           meningitidis MC58
          Length = 146

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 6/141 (4%)

Query: 1   MTRIDFHSNVPQKIAYVCRLVRKARASGATLVLRTPDRAELQQLDQALWSFSEQDFLPH- 59
           M +  F+++V Q   + CRL+ +A   G  +++ +    +LQ+LD+ LW +  + F+PH 
Sbjct: 1   MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60

Query: 60  VMAGDPLAAQTPIILTA--DDSADLPHHQILINLGSDTPAHFARF--ERLLEIISADDAD 115
           +   +      P +L A   +   +P    ++NL SD   + A     R+LEI+     +
Sbjct: 61  IWETEEAMPSEPSVLLACGGNLPRIPEGMTVLNL-SDGFWNTAPVLPARVLEIVGNSLEE 119

Query: 116 KAAGRDRYRFYKERGYPLSHH 136
            A  R+R+  Y+  G+ + HH
Sbjct: 120 LADARERFTAYRRSGFAIEHH 140