BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0098.p         (83 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PM0894 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex...    86   3e-17
VC2413 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex...    83   2e-16
HI1232 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex...    82   2e-16
NMA1555 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase comple...    82   4e-16
RSc1601 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase comple...    79   4e-15

>PM0894 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide acyltransferase (E2) component, and
           related enzymes Pmu Pasteurella multocida
          Length = 632

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 60/86 (69%), Gaps = 3/86 (3%)

Query: 1   VRKFARELGVDLSRVPATGPKGRILQLDVQNFVK-GVMAGSTSVAAAAPATNG--SGSGM 57
           VR+ ARE GV+L +V  TG KGRIL+ DVQ +VK  + A  +   +AAPA +G  +G+G+
Sbjct: 327 VRRLAREFGVNLDKVKGTGRKGRILKEDVQAYVKAAIKAVESGSVSAAPAGSGVANGAGL 386

Query: 58  NLLPWPSLDFSKFGETESLLLSXPNR 83
            LLPWP +DFSKFGE E + L+  N+
Sbjct: 387 GLLPWPKVDFSKFGEVEEVELTRINK 412


>VC2413 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide acyltransferase (E2) component, and
           related enzymes Vch Vibrio cholerae
          Length = 635

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 54/79 (68%)

Query: 1   VRKFARELGVDLSRVPATGPKGRILQLDVQNFVKGVMAGSTSVAAAAPATNGSGSGMNLL 60
           VR+ ARE GV+L++V  +G K RIL+ DVQN+VK  +    S A AA +  G G+ + LL
Sbjct: 333 VRRLAREFGVNLAKVKGSGRKNRILKEDVQNYVKEALKRLESGAQAAASGKGDGAALGLL 392

Query: 61  PWPSLDFSKFGETESLLLS 79
           PWP +DFSKFG+TE   LS
Sbjct: 393 PWPKVDFSKFGDTEVQPLS 411


>HI1232 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide acyltransferase (E2) component, and
           related enzymes Hin Haemophilus influenzae
          Length = 567

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 56/85 (65%), Gaps = 2/85 (2%)

Query: 1   VRKFARELGVDLSRVPATGPKGRILQLDVQNFVKGVMAGSTSVAAAAPATNG--SGSGMN 58
           +R+ ARE GV+L +V  TG KGRI++ D++ +VK  +    S A A    NG  +G+G+ 
Sbjct: 263 IRRLAREFGVNLDKVKGTGRKGRIVKEDIEAYVKTAVKAYESGATAQATGNGVANGAGLG 322

Query: 59  LLPWPSLDFSKFGETESLLLSXPNR 83
           LLPWP +DFSKFGE E + LS  N+
Sbjct: 323 LLPWPKVDFSKFGEIEEVELSRINK 347


>NMA1555 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide acyltransferase (E2) component, and
           related enzymes NmA Neisseria meningitidis Z2491
          Length = 535

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 53/80 (66%), Gaps = 6/80 (7%)

Query: 2   RKFARELGVDLSRVPATGPKGRILQLDVQNFVKGVMAGSTSVAAAAPATNGS--GSGMNL 59
           RK ARELGVDL +V  TG KGRI+  D++ FVK VM G     AA PA  G+  G G++L
Sbjct: 240 RKLARELGVDLGQVKGTGLKGRIVGDDIKAFVKSVMQG----GAAKPAAVGASLGGGLDL 295

Query: 60  LPWPSLDFSKFGETESLLLS 79
           LPWP +DFSKFG  E   LS
Sbjct: 296 LPWPKVDFSKFGNVEVKELS 315


>RSc1601 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide acyltransferase (E2) component, and
           related enzymes Rso Ralstonia solanacearum
          Length = 554

 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 52/81 (64%), Gaps = 2/81 (2%)

Query: 1   VRKFARELGVDLSRVPATGPKGRILQLDVQNFVKGVMAGSTSVAAAAPATNGSGSG--MN 58
           VRK+ARELGVD++ V  TGPK RI Q DVQ +VKGVM G  +    A A      G  +N
Sbjct: 254 VRKYARELGVDVNLVGGTGPKNRITQEDVQRYVKGVMTGQAAAPGKAAAAAAPAGGGELN 313

Query: 59  LLPWPSLDFSKFGETESLLLS 79
           LLPWP +DF+KFG  E   LS
Sbjct: 314 LLPWPKVDFTKFGPVEPKPLS 334