BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0085.p         (119 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0765 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...    75   3e-14
PA1508 [S] COG4104 Uncharacterized conserved protein Pae Pseudom...    69   3e-12
YPO0866 [S] COG4104 Uncharacterized conserved protein Ype Yersin...    58   5e-09

>RSp0765 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 89

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 54/84 (64%), Gaps = 2/84 (2%)

Query: 1  MGRPFIVVGDKTSHGGTVISGDQTFLVHGKAVARVGDLTSCPQC--KGTFPITSGAGDMK 58
          M RPFI++GDKT HGG VI+        GK +A VGD  +CPQ    GT  I +G  ++ 
Sbjct: 1  MTRPFILLGDKTDHGGVVITASGNTTTGGKGIACVGDKVTCPQSGHGGTTVIVTGDPNVV 60

Query: 59 SMGQAPARDGDRTACGATLIASQG 82
            G+  AR GD+TACGATL+ASQG
Sbjct: 61 IDGRQAARHGDKTACGATLLASQG 84


>PA1508 [S] COG4104 Uncharacterized conserved protein Pae Pseudomonas
          aeruginosa
          Length = 86

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 47/76 (61%)

Query: 5  FIVVGDKTSHGGTVISGDQTFLVHGKAVARVGDLTSCPQCKGTFPITSGAGDMKSMGQAP 64
           I +GD TSHGGTVI       ++GK +A VG    CP CKGTFPIT G+  +   G   
Sbjct: 3  IIRLGDTTSHGGTVIEAFGQTDLNGKPMAGVGHQVVCPLCKGTFPITEGSALLDVNGVPV 62

Query: 65 ARDGDRTACGATLIAS 80
          A  G +TACGA+LIAS
Sbjct: 63 ALHGMKTACGASLIAS 78


>YPO0866 [S] COG4104 Uncharacterized conserved protein Ype Yersinia pestis
          Length = 101

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 6  IVVGDKTSHGGTVISGDQTFLVHGKAVARVGDLTSCPQCKGTFPITSGAGDMKSMGQAPA 65
          I +GDKT+HGG V+SG       G  VAR+ D  SCPQ   TF I       K  G   A
Sbjct: 18 ICIGDKTTHGGQVLSGSGKMKFAGIGVARLNDPVSCPQHGNTF-IIEAHPSFKDNGIPVA 76

Query: 66 RDGDRTACGATLIASQGVAT 85
            G R  CG TLI+SQ  AT
Sbjct: 77 FHGHRCGCGCTLISSQKGAT 96