BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0078.p (471 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC1772 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, ... 791 0.0 mlr6847 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases,... 764 0.0 AGc227 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, ... 754 0.0 SMb21488 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases... 736 0.0 BMEI1900 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases... 671 0.0 >CC1772 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 Ccr Caulobacter vibrioides Length = 665 Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/469 (82%), Positives = 420/469 (89%) Query: 1 VDYYIWALQVAGVGTLLSGINLVVTIVKMRAPGMNMMKMPVFTWTSLCTNVLIVAAFPVL 60 VDYYIWALQ+AGVGTLLSGINLVVTIVKMRAPGM++MKMPVFTWT+LCTNVLIVAAFP+L Sbjct: 195 VDYYIWALQIAGVGTLLSGINLVVTIVKMRAPGMSLMKMPVFTWTALCTNVLIVAAFPIL 254 Query: 61 TAVLGMLSLDRIFGTNFFTNDMGGNAMMYVNLIWIWGHPEVYILILPAFGVFSEIVSTFS 120 TAVLG+LS DR GTNFFTND GGN MMYVNLIWIWGHPEVYILILPAFGVFSE+VSTF Sbjct: 255 TAVLGLLSADRYLGTNFFTNDFGGNPMMYVNLIWIWGHPEVYILILPAFGVFSEVVSTFC 314 Query: 121 GKRLFGYTSMVHATVVITILSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNW 180 KRLFGY+SMV+ATVVIT+LSY+VWLHHFFTMGSGASVN+FFGITTMIISIPTGAKIFNW Sbjct: 315 RKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGASVNAFFGITTMIISIPTGAKIFNW 374 Query: 181 LFTMYRGRIRFEVPMLWTIGFMVTFVIGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG 240 LFTMYRGRIRFEVPMLWT+GFMVTFVIGGMTGVLLA+PPADFVLHNSLFLIAHFHNVIIG Sbjct: 375 LFTMYRGRIRFEVPMLWTVGFMVTFVIGGMTGVLLAIPPADFVLHNSLFLIAHFHNVIIG 434 Query: 241 GVVFGMFAGINFWFPKAFGFKLNEFWGKCSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHF 300 GVVFGMFAGI +WFPKAFGF+L+ FWGK SFWFWL GFY AFMPLYVLGLMGVTRR+SHF Sbjct: 435 GVVFGMFAGIVYWFPKAFGFRLDPFWGKLSFWFWLSGFYFAFMPLYVLGLMGVTRRVSHF 494 Query: 301 DDPSLQIWFVVAALGAGLIALGIGSFIIQIAVSIRDRKKLADVTGDPWNGRTLEWSTSSP 360 +DPSLQIWFV+AA GA LI LGI +FI+QI VSIR+R+ L D TGDPW+GRTLEWSTSSP Sbjct: 495 EDPSLQIWFVIAAFGAVLILLGIIAFIVQIVVSIRNREALRDETGDPWDGRTLEWSTSSP 554 Query: 361 PPAYNFAFTPVVHDNDAWADMKKNNYQRPLGDFVEIHMPKNTGAGFIIAALSAAVGFAMI 420 PPAYNFAFTP+VHD DAW DMK+ Y RP F+ IHMP NTGAG ++A LS GFAMI Sbjct: 555 PPAYNFAFTPMVHDLDAWWDMKQRGYVRPTSGFIPIHMPANTGAGVVLAGLSVVCGFAMI 614 Query: 421 WHMWLPAVAGFVALCVATIVHTFNYNRDYYIPADEVVRVEAERTRLLNS 469 WH+W AV F+AL A I HTFN+ RDYYIPA+EVVRVE RT L S Sbjct: 615 WHIWWLAVLSFIALVGAAIAHTFNFKRDYYIPAEEVVRVEDARTEALRS 663 >mlr6847 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 Mlo Mesorhizobium loti Length = 665 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/470 (79%), Positives = 409/470 (87%) Query: 1 VDYYIWALQVAGVGTLLSGINLVVTIVKMRAPGMNMMKMPVFTWTSLCTNVLIVAAFPVL 60 VDYYIWALQVAGVGT LSGINL+ TI+KMRAPGM MM+MPVFTWTSLCTNVLIVA+FPVL Sbjct: 195 VDYYIWALQVAGVGTTLSGINLICTIIKMRAPGMTMMRMPVFTWTSLCTNVLIVASFPVL 254 Query: 61 TAVLGMLSLDRIFGTNFFTNDMGGNAMMYVNLIWIWGHPEVYILILPAFGVFSEIVSTFS 120 TAVL +L+LDR GTNFFTND GGN MMYVNLIWIWGHPEVYILILP FGVFSE+ STFS Sbjct: 255 TAVLSLLALDRYVGTNFFTNDFGGNPMMYVNLIWIWGHPEVYILILPLFGVFSEVTSTFS 314 Query: 121 GKRLFGYTSMVHATVVITILSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNW 180 GKRLFGYTSMV+ATVVITILSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNW Sbjct: 315 GKRLFGYTSMVYATVVITILSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNW 374 Query: 181 LFTMYRGRIRFEVPMLWTIGFMVTFVIGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG 240 LFTMYRGRIRFE+PM+WT+ FM+TFV+GGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG Sbjct: 375 LFTMYRGRIRFELPMMWTMAFMLTFVVGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG 434 Query: 241 GVVFGMFAGINFWFPKAFGFKLNEFWGKCSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHF 300 GV+FG+FAGI +W+PKAFGFKL+ FWGK SFW W+VGF+ AFMPLY+LGLMGVTRRM F Sbjct: 435 GVLFGLFAGIAYWWPKAFGFKLDPFWGKVSFWCWVVGFWFAFMPLYILGLMGVTRRMRVF 494 Query: 301 DDPSLQIWFVVAALGAGLIALGIGSFIIQIAVSIRDRKKLADVTGDPWNGRTLEWSTSSP 360 DDPSLQIWFV+AA GA LIA GI +F+IQI VSIR R+ L D TGDPW+GRTLEWSTSSP Sbjct: 495 DDPSLQIWFVIAAFGAVLIAFGIAAFLIQIFVSIRKREALTDPTGDPWDGRTLEWSTSSP 554 Query: 361 PPAYNFAFTPVVHDNDAWADMKKNNYQRPLGDFVEIHMPKNTGAGFIIAALSAAVGFAMI 420 PPAYNFAFTPVV DNDAW DMKK Y RPL F IHMP NTG G I+AA S A+GF +I Sbjct: 555 PPAYNFAFTPVVRDNDAWWDMKKAGYTRPLSGFKPIHMPSNTGTGVILAAFSVALGFGLI 614 Query: 421 WHMWLPAVAGFVALCVATIVHTFNYNRDYYIPADEVVRVEAERTRLLNSH 470 W++W A FV L I HTFNY+RD++IPA EV + E RT LL + Sbjct: 615 WYIWWLAALSFVCLIATAIGHTFNYHRDFHIPAAEVTQTEVARTTLLAAQ 664 >AGc227 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 667 Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/470 (77%), Positives = 412/470 (87%) Query: 1 VDYYIWALQVAGVGTLLSGINLVVTIVKMRAPGMNMMKMPVFTWTSLCTNVLIVAAFPVL 60 VDYYIW LQ+AGVGT LSGINL+VTI+KMRAPGM MM+MP+F WTSLC+N+LIVA+FP+L Sbjct: 197 VDYYIWGLQIAGVGTTLSGINLIVTIIKMRAPGMTMMRMPIFVWTSLCSNILIVASFPIL 256 Query: 61 TAVLGMLSLDRIFGTNFFTNDMGGNAMMYVNLIWIWGHPEVYILILPAFGVFSEIVSTFS 120 TA L +L+LDR GTNFFTND+GGN MMYVNLIWIWGHPEVYIL+LPAFG+FSEIV+TFS Sbjct: 257 TATLALLTLDRYAGTNFFTNDLGGNPMMYVNLIWIWGHPEVYILVLPAFGIFSEIVATFS 316 Query: 121 GKRLFGYTSMVHATVVITILSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNW 180 GKRLFGY SMV+AT VITILSYLVWLHHFFTMGSGA+VN+FFGITTMIISIPTGAKIFNW Sbjct: 317 GKRLFGYASMVYATAVITILSYLVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNW 376 Query: 181 LFTMYRGRIRFEVPMLWTIGFMVTFVIGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG 240 LFTMY+GRI+F+VPMLWTIGFM+TFVIGGMTGVLLAVPPADFVLHNSLFLIAHFHN IIG Sbjct: 377 LFTMYKGRIKFDVPMLWTIGFMITFVIGGMTGVLLAVPPADFVLHNSLFLIAHFHNTIIG 436 Query: 241 GVVFGMFAGINFWFPKAFGFKLNEFWGKCSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHF 300 GVVFG+ AGI +WFPKAFG++L+ FWGK SFWFW +GFY AFMPLY+LGLMG+TRR+S F Sbjct: 437 GVVFGVLAGIVYWFPKAFGYRLDPFWGKLSFWFWFIGFYFAFMPLYILGLMGITRRISQF 496 Query: 301 DDPSLQIWFVVAALGAGLIALGIGSFIIQIAVSIRDRKKLADVTGDPWNGRTLEWSTSSP 360 +D SLQIWFV+AA GA LIALGI SFIIQ+ VS R +L DVTGDP+N RTLEWSTSSP Sbjct: 497 EDNSLQIWFVIAAFGAFLIALGIASFIIQLIVSFLKRDQLRDVTGDPYNARTLEWSTSSP 556 Query: 361 PPAYNFAFTPVVHDNDAWADMKKNNYQRPLGDFVEIHMPKNTGAGFIIAALSAAVGFAMI 420 PP YNFAFTPV+HD DAW DMKK Y RPL F+ IHMPKNTGAG II+A+S +GFA++ Sbjct: 557 PPQYNFAFTPVIHDVDAWHDMKKRGYSRPLDGFIPIHMPKNTGAGVIISAISVVLGFALV 616 Query: 421 WHMWLPAVAGFVALCVATIVHTFNYNRDYYIPADEVVRVEAERTRLLNSH 470 WH+W A F+ + +I HTFNYNRDYYIPA +V VEAERT+LL Sbjct: 617 WHIWWLAALSFIGVIAVSIAHTFNYNRDYYIPASDVSTVEAERTKLLAKQ 666 >SMb21488 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 Sme Sinorhizobium meliloti Length = 669 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/471 (76%), Positives = 405/471 (85%) Query: 1 VDYYIWALQVAGVGTLLSGINLVVTIVKMRAPGMNMMKMPVFTWTSLCTNVLIVAAFPVL 60 VDYY+W LQ+AG+GT LSGINL+ TIVKMRAPGM MMKMPVFTWTSLCTNVLIVA FPVL Sbjct: 197 VDYYVWGLQIAGIGTTLSGINLIATIVKMRAPGMTMMKMPVFTWTSLCTNVLIVATFPVL 256 Query: 61 TAVLGMLSLDRIFGTNFFTNDMGGNAMMYVNLIWIWGHPEVYILILPAFGVFSEIVSTFS 120 TA L +L+LDR GTNFFTND+GGN MMYVNLIWIWGHPEVYILILPAFG+FSE+V+TF Sbjct: 257 TATLALLTLDRYAGTNFFTNDLGGNPMMYVNLIWIWGHPEVYILILPAFGIFSEVVATFC 316 Query: 121 GKRLFGYTSMVHATVVITILSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNW 180 GKRLFGY SMV+ATVVITILSY+VWLHHFFTMGSGASVN+FFGITTMIISIPTGAK+FNW Sbjct: 317 GKRLFGYASMVYATVVITILSYIVWLHHFFTMGSGASVNAFFGITTMIISIPTGAKMFNW 376 Query: 181 LFTMYRGRIRFEVPMLWTIGFMVTFVIGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG 240 LFTMYRGRIR+EVPMLWTIGFMVTFV+GGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG Sbjct: 377 LFTMYRGRIRYEVPMLWTIGFMVTFVLGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG 436 Query: 241 GVVFGMFAGINFWFPKAFGFKLNEFWGKCSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHF 300 GVVFG+ AG+ +WFPKAFGF+L+ FWGK SFWFWL GFY AFMPLYVLGLMGVTRR+S F Sbjct: 437 GVVFGLMAGVVYWFPKAFGFRLDPFWGKMSFWFWLTGFYFAFMPLYVLGLMGVTRRVSQF 496 Query: 301 DDPSLQIWFVVAALGAGLIALGIGSFIIQIAVSIRDRKKLADVTGDPWNGRTLEWSTSSP 360 +DPSLQIWFV+AA GA LIALGI S +IQ+ VS R++L D TGDPW+GRTLEWST+SP Sbjct: 497 EDPSLQIWFVIAAFGAFLIALGILSMLIQLVVSFVRREELRDTTGDPWDGRTLEWSTASP 556 Query: 361 PPAYNFAFTPVVHDNDAWADMKKNNYQRPLGDFVEIHMPKNTGAGFIIAALSAAVGFAMI 420 PP YNFAFTP+VHD D+W DMKK + RPL F IHMPKNTG G I+ A+S FAM+ Sbjct: 557 PPDYNFAFTPLVHDQDSWWDMKKRGHSRPLVGFKPIHMPKNTGTGVILGAISVVFAFAMV 616 Query: 421 WHMWLPAVAGFVALCVATIVHTFNYNRDYYIPADEVVRVEAERTRLLNSHV 471 W+MW + FVA+ I HTFNY+RD++IPA+ V E +RT L V Sbjct: 617 WYMWWLVILSFVAMAAIAIGHTFNYDRDFHIPANVVADTEGKRTEALAPEV 667 >BMEI1900 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 Bme Brucella melitensis Length = 659 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/471 (69%), Positives = 387/471 (82%), Gaps = 1/471 (0%) Query: 1 VDYYIWALQVAGVGTLLSGINLVVTIVKMRAPGMNMMKMPVFTWTSLCTNVLIVAAFPVL 60 +DYY+WAL ++G+GTLLS +NL+ TI+KMRAPGM MM++PVFTWT+LC+NVLIVAAFP+L Sbjct: 187 MDYYLWALNISGMGTLLSAVNLITTIIKMRAPGMGMMQLPVFTWTALCSNVLIVAAFPIL 246 Query: 61 TAVLGMLSLDRIFGTNFFTNDMGGNAMMYVNLIWIWGHPEVYILILPAFGVFSEIVSTFS 120 T L +L+LDR +FFTND GGN MMYVNLIWIWGHPEVYIL+LP FG++SEI++TFS Sbjct: 247 TVTLSLLTLDRYLDFHFFTNDAGGNPMMYVNLIWIWGHPEVYILVLPCFGIYSEIIATFS 306 Query: 121 GKRLFGYTSMVHATVVITILSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNW 180 GKRLFGYTSMV+ATV IT+LS+LVW HHFFTMG GASVNSFFG+ TMIISIPTGAK+FNW Sbjct: 307 GKRLFGYTSMVYATVAITVLSFLVWAHHFFTMGGGASVNSFFGVATMIISIPTGAKVFNW 366 Query: 181 LFTMYRGRIRFEVPMLWTIGFMVTFVIGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIG 240 LFTMY+GR+R E P++WTIGFM TFVIGGMTGVLLAVPPADFVLHNS+FLIAHFHNVII Sbjct: 367 LFTMYKGRVRMETPVMWTIGFMCTFVIGGMTGVLLAVPPADFVLHNSVFLIAHFHNVIIS 426 Query: 241 GVVFGMFAGINFWFPKAFGFKLNEFWGKCSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHF 300 GV+FG FAG+ +W+PKAFGFKLNE GK +FW WLVGF LAFMPLYVLGLMG+TRR++H Sbjct: 427 GVLFGCFAGVVYWWPKAFGFKLNERLGKNAFWCWLVGFMLAFMPLYVLGLMGMTRRLNHT 486 Query: 301 DDPSLQIWFVVAALGAGLIALGIGSFIIQIAVSIRDRKKLADVTGDPW-NGRTLEWSTSS 359 ++P+ I+ ++AA+G +I GI I+QI VSIRDR KL D GD W +GRTLEWS SS Sbjct: 487 ENPAWHIYLIIAAIGVAVILCGIVCQILQIMVSIRDRDKLRDTNGDTWGSGRTLEWSISS 546 Query: 360 PPPAYNFAFTPVVHDNDAWADMKKNNYQRPLGDFVEIHMPKNTGAGFIIAALSAAVGFAM 419 PPP YNFA TP V D+DAW DMK+N Y R F IHMPKNT GF++ LS GFAM Sbjct: 547 PPPFYNFAETPTVRDHDAWWDMKQNGYVRRTEKFARIHMPKNTATGFLVGILSIPFGFAM 606 Query: 420 IWHMWLPAVAGFVALCVATIVHTFNYNRDYYIPADEVVRVEAERTRLLNSH 470 IWH+W A+A +A+ V I H+FN +RDYY+ ADEV RVE RTR L + Sbjct: 607 IWHIWWLAIASALAMFVVAIAHSFNNDRDYYVSADEVQRVEDARTRQLTAQ 657