BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0061.p         (189 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF2477 [H] COG0132 Dethiobiotin synthetase Xfa Xylella fastidios...   115   7e-26
YPO1154 [H] COG0132 Dethiobiotin synthetase Ype Yersinia pestis       105   5e-23
ZbioD [H] COG0132 Dethiobiotin synthetase EcZ Escherichia coli O...   100   2e-21
ECs0856 [H] COG0132 Dethiobiotin synthetase Ecs Escherichia coli...   100   2e-21
bioD [H] COG0132 Dethiobiotin synthetase Eco Escherichia coli K12      98   1e-20

>XF2477 [H] COG0132 Dethiobiotin synthetase Xfa Xylella fastidiosa 9a5c
          Length = 226

 Score =  115 bits (287), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 92/143 (64%)

Query: 1   MSGRSYFVTGTDTGVGKTLVASALIHLHAARGLRAGGMKPVASGAFLQDGVWCNEDVQAL 60
           MS  +++VTGTDTG+GKT V+  L+H+   RG RA GMKPVASG    D  W NED  AL
Sbjct: 1   MSLSAFYVTGTDTGIGKTFVSCILLHMLRGRGQRAVGMKPVASGCTYSDTGWRNEDALAL 60

Query: 61  QAAANVDLPLHLVNPYLLRQATAPHIAAAEEGVQIALDHLALCHAQLQSACDVLIVEGAG 120
           QAA++      L+NPY L  A AP IAA E GV +AL+ L+    QL++  DV++VEG G
Sbjct: 61  QAASDPTPAYDLINPYALPAAVAPEIAAIEAGVTVALEPLSAAFTQLRAQADVVVVEGVG 120

Query: 121 GFMVPLDADHNSDDLVARLGLPV 143
           G+  PL+A  +   LV  L +PV
Sbjct: 121 GWATPLNATIDQATLVRALEIPV 143


>YPO1154 [H] COG0132 Dethiobiotin synthetase Ype Yersinia pestis
          Length = 240

 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 2/141 (1%)

Query: 4   RSYFVTGTDTGVGKTLVASALIHLHAARGLRAGGMKPVASGAFLQ-DGVWCNEDVQALQA 62
           + +F+TGTDT VGKT+ + AL+    A+G R  G KPVASG+ +  DG+  N D  ALQA
Sbjct: 3   KRWFITGTDTDVGKTVASCALLQAATAQGYRTAGYKPVASGSQMTADGL-RNSDALALQA 61

Query: 63  AANVDLPLHLVNPYLLRQATAPHIAAAEEGVQIALDHLALCHAQLQSACDVLIVEGAGGF 122
            ++  L    VNP+   +AT+PHIA+  EG  I L  L+    QL+ + D +++EGAGG+
Sbjct: 62  NSSQRLGYSQVNPFTFLEATSPHIASESEGRAIPLTALSQGLRQLEPSADWILIEGAGGW 121

Query: 123 MVPLDADHNSDDLVARLGLPV 143
             PL       D V +  LPV
Sbjct: 122 FTPLSPQATFADWVQQEQLPV 142


>ZbioD [H] COG0132 Dethiobiotin synthetase EcZ Escherichia coli O157:H7
           EDL933
          Length = 225

 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 78/143 (54%), Gaps = 1/143 (0%)

Query: 1   MSGRSYFVTGTDTGVGKTLVASALIHLHAARGLRAGGMKPVASGAFLQDGVWCNEDVQAL 60
           MS R YFVTGTDT VGKT+ + AL+    A G R  G KPVASG+        N D  AL
Sbjct: 1   MSKR-YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALAL 59

Query: 61  QAAANVDLPLHLVNPYLLRQATAPHIAAAEEGVQIALDHLALCHAQLQSACDVLIVEGAG 120
           Q  +++ L    VNPY   + T+PHI +A+EG  I    ++     L+   D ++VEGAG
Sbjct: 60  QRNSSLQLDYATVNPYTFAEPTSPHIISAQEGRSIESSVMSSGLRALEQQADWVLVEGAG 119

Query: 121 GFMVPLDADHNSDDLVARLGLPV 143
           G+  PL       D V +  LPV
Sbjct: 120 GWFTPLSDTFTFADWVTQEQLPV 142


>ECs0856 [H] COG0132 Dethiobiotin synthetase Ecs Escherichia coli O157:H7
          Length = 225

 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 78/143 (54%), Gaps = 1/143 (0%)

Query: 1   MSGRSYFVTGTDTGVGKTLVASALIHLHAARGLRAGGMKPVASGAFLQDGVWCNEDVQAL 60
           MS R YFVTGTDT VGKT+ + AL+    A G R  G KPVASG+        N D  AL
Sbjct: 1   MSKR-YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALAL 59

Query: 61  QAAANVDLPLHLVNPYLLRQATAPHIAAAEEGVQIALDHLALCHAQLQSACDVLIVEGAG 120
           Q  +++ L    VNPY   + T+PHI +A+EG  I    ++     L+   D ++VEGAG
Sbjct: 60  QRNSSLQLDYATVNPYTFAEPTSPHIISAQEGRSIESSVMSSGLRALEQQADWVLVEGAG 119

Query: 121 GFMVPLDADHNSDDLVARLGLPV 143
           G+  PL       D V +  LPV
Sbjct: 120 GWFTPLSDTFTFADWVTQEQLPV 142


>bioD [H] COG0132 Dethiobiotin synthetase Eco Escherichia coli K12
          Length = 225

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 78/143 (54%), Gaps = 1/143 (0%)

Query: 1   MSGRSYFVTGTDTGVGKTLVASALIHLHAARGLRAGGMKPVASGAFLQDGVWCNEDVQAL 60
           MS R YFVTGTDT VGKT+ + AL+    A G R  G KPVASG+        N D  AL
Sbjct: 1   MSKR-YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALAL 59

Query: 61  QAAANVDLPLHLVNPYLLRQATAPHIAAAEEGVQIALDHLALCHAQLQSACDVLIVEGAG 120
           Q  +++ L    VNPY   + T+PHI +A+EG  I    ++     L+   D ++VEGAG
Sbjct: 60  QRNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAG 119

Query: 121 GFMVPLDADHNSDDLVARLGLPV 143
           G+  PL       D V +  LPV
Sbjct: 120 GWFTPLSDTFTFADWVTQEQLPV 142