BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0055.p (212 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEI0320 [K] COG1802 Transcriptional regulators Bme Brucella mel... 175 7e-44 AGc1447 [K] COG1802 Transcriptional regulators Atu Agrobacterium... 175 7e-44 mlr7428 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 174 1e-43 mlr7144 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 105 7e-23 PA1269 [K] COG1802 Transcriptional regulators Pae Pseudomonas ae... 95 1e-19 >BMEI0320 [K] COG1802 Transcriptional regulators Bme Brucella melitensis Length = 230 Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 92/194 (47%), Positives = 130/194 (67%), Gaps = 11/194 (5%) Query: 13 RIAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPRRGVRV 72 RI+ +L RII GEI G LRQDH+A+EFQ+SHVPVREAFR+LEA+GL ++ PRRGVRV Sbjct: 20 RISRILADRIIAGEIEPGTKLRQDHIAEEFQTSHVPVREAFRRLEAQGLAVSEPRRGVRV 79 Query: 73 TQVDRAAVKENAEMRGSLEILALRHSIRKFGPEHIAR--LEAAQEAC---AQAASLIEWD 127 D ++E AEMR +LE+LALRH+ HI R L+AA++A ++ + W+ Sbjct: 80 ASFDIGEIREVAEMRAALEVLALRHAA-----PHITRAVLDAAEQATLEGDKSRDVRSWE 134 Query: 128 AANNLFHDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDHRLIIEALRD 187 AN FH ++ + C MPRLLA + L ++R+LF+T ++ W+ R+DHDHR I+ ALR Sbjct: 135 DANRRFHRLILTPCKMPRLLAAIDDLHAASARFLFAT-WRSAWEARTDHDHRAILAALRQ 193 Query: 188 KKTDRAVQLLSMHI 201 + A +L+ H+ Sbjct: 194 NDIESAATILARHV 207 >AGc1447 [K] COG1802 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 226 Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 128/194 (65%), Gaps = 1/194 (0%) Query: 13 RIAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPRRGVRV 72 RI+ L RI+RGE++ G LRQDH+A EF +SHVPVREAFR+LEA+GL ++PRRGVRV Sbjct: 16 RISRTLAERIVRGELSPGERLRQDHIAAEFGASHVPVREAFRRLEAQGLAASIPRRGVRV 75 Query: 73 TQVDRAAVKENAEMRGSLEILALRHSIRKFGPEHIARLEAAQEACAQAASLIEWDAANNL 132 V+E AEMR +LE+LALRH+I P + + EAA A + W+ AN Sbjct: 76 ADFGLDDVREVAEMRAALEVLALRHAIPNMTPAILDQAEAATLEGDSAVDVQHWEEANRR 135 Query: 133 FHDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDHRLIIEALRDKKTDR 192 FH ++++ C MPRL+ + L ++R+LFS ++ GW+ R+D DHR I++ALR + + Sbjct: 136 FHRLITAPCNMPRLMEAIDGLHAASARFLFS-AWRAGWERRTDTDHRAILDALRGGRAEE 194 Query: 193 AVQLLSMHIGTMER 206 AV++L H+ + R Sbjct: 195 AVRILDGHVQWIGR 208 >mlr7428 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 222 Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 92/194 (47%), Positives = 125/194 (64%), Gaps = 1/194 (0%) Query: 13 RIAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPRRGVRV 72 RI++VL RII G I GA LRQDHVA+EF +SHVPVREAFR+LEA+GL ++ PRRGVRV Sbjct: 12 RISKVLADRIISGAIEPGARLRQDHVAEEFNTSHVPVREAFRRLEAQGLAVSEPRRGVRV 71 Query: 73 TQVDRAAVKENAEMRGSLEILALRHSIRKFGPEHIARLEAAQEACAQAASLIEWDAANNL 132 D VKE AEMR +LE+LALRH+ + E A +A ++ + W+ AN Sbjct: 72 AAFDLGEVKEVAEMRAALEVLALRHAAPHLTSAILDLAEEATKAGDKSRDVRSWEEANRA 131 Query: 133 FHDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDHRLIIEALRDKKTDR 192 FH ++ + CGMPRLLA + L ++R+LF+ ++ W+ R+D DHR I+ ALR T+ Sbjct: 132 FHRLILAPCGMPRLLATIDDLHAASARFLFA-AWRSEWEARTDQDHRAILTALRQGNTES 190 Query: 193 AVQLLSMHIGTMER 206 A L H+ + R Sbjct: 191 AAATLGRHVQWIGR 204 >mlr7144 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 253 Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 69/197 (35%), Positives = 102/197 (51%), Gaps = 1/197 (0%) Query: 6 EHPSTV-ERIAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLT 64 E P TV E++A VLR I G + G ALRQD +A++F S +P+R+A RQLEAEG+V Sbjct: 37 ERPQTVAEQVANVLREAIASGTLKAGTALRQDDLAEQFGFSRMPIRDALRQLEAEGIVSI 96 Query: 65 LPRRGVRVTQVDRAAVKENAEMRGSLEILALRHSIRKFGPEHIARLEAAQEACAQAASLI 124 P +G V ++D A + E +R LE ALR SI + E + ++ Sbjct: 97 HPTKGAHVARMDGAEISEIYAVRELLECEALRLSIPALLDGKLDEAEQVLDQIDAERNVG 156 Query: 125 EWDAANNLFHDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDHRLIIEA 184 W A N FH L + CG RLL +++ RY+ ++ RS +HR ++ A Sbjct: 157 RWGALNRTFHLSLYAACGNQRLLGLIEAHHNAADRYVRILLSNLDYRTRSQAEHRDLLAA 216 Query: 185 LRDKKTDRAVQLLSMHI 201 R + +AV +L H+ Sbjct: 217 CRQRDGKKAVSVLRQHL 233 >PA1269 [K] COG1802 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 222 Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 95/195 (48%), Gaps = 2/195 (1%) Query: 8 PSTVERIAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPR 67 PS E IA+ LR II G A +RQD +AQ F S +PVREA ++LEAEGLVL Sbjct: 11 PSASEIIAKHLREAIIAGHFAEDEPIRQDDIAQLFNVSKIPVREALKRLEAEGLVLFQRN 70 Query: 68 RGVRVTQVDRAAVKENAEMRGSLEILALRHSIRKFGPEHIARLEAAQEACAQAASLIEWD 127 +G VT++ + + E+R LE+ A+R ++ AR EA ++ W Sbjct: 71 KGAVVTRISEPELAQMFEVRVLLEVQAIRLAVPNMDEATFARAEAICADFVGEDNVGRWA 130 Query: 128 AANNLFHDILSSECGMPRLLAVLKQLQLTNSRYL-FSTGFKRGWQPRSDHDHRLIIEALR 186 N H L P L+ +++ + RYL G Q R+D +HR I+ A R Sbjct: 131 ELNWQLHACLYEPAQRPFLVNLIRSIHDKLERYLRMQMSLSEGKQ-RADQEHREIVAACR 189 Query: 187 DKKTDRAVQLLSMHI 201 +RA L+ HI Sbjct: 190 AGDAERAATLIEAHI 204