BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0045.p (561 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 228 3e-59 tap [NT] COG0840 Methyl-accepting chemotaxis protein Eco Escheri... 218 4e-56 Ztap [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escher... 217 5e-56 ECs2595 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Esc... 217 5e-56 STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 216 1e-55 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 228 bits (581), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 128/333 (38%), Positives = 224/333 (67%), Gaps = 2/333 (0%) Query: 212 ARQARERLDTVVAAVGGLLLLVMIVSVASLYRLVTGPLSQAAQVASRVAKGDLCGRIDGG 271 A+ A ++ +V AV L L+ I + A + R +T P++ A +A VA+G+L ++ Sbjct: 183 AQGANAKIQMIVLAV--LATLLAIATGAFITRTITRPINHAMHLAEAVAQGNLTHLLEVD 240 Query: 272 FHGETGQLLSSLQDMRQGLSHLVREVRHGARVMRGSAAEIADGALNLSTRAAQQAGSLQQ 331 E G+LL++L+ M + L +V +VR G + +++E+A G ++LS+R QQA SL++ Sbjct: 241 TQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSLEE 300 Query: 332 TAVAMEQLNQAVQQSADRAQQACSLTRSAAQAALEGGVAVSEMVGNMHAVHLAAGRIEEI 391 TA AMEQL V+Q+AD AQ+A L +A+ A +GG AV E + M ++ ++ +I +I Sbjct: 301 TAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIVDI 360 Query: 392 VAKLDGLSSQTNLLALNAAVEAAHAGTHGQAFSVVADEVRQLARRSADAAQEIRALLNDA 451 + +DG++ QTN+LALNAAVEAA AG G+ F+VVA EVR LA+RSA AA+EI+AL+ D+ Sbjct: 361 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIEDS 420 Query: 452 MARINQGSRRAQTAGRSMQEVVAQVGRLNQLIGEVASASSQQSAGARRISQSVSAIDQAT 511 + ++ G+ + + AG+ +++VVA + + ++ E++++S +QS G +I+++++ +D+AT Sbjct: 421 VGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDKAT 480 Query: 512 QRNVLLVQQSSAAAEAMRLATERMAALMARFRL 544 Q N LV++S+ AA+A++ ++A +++ F+L Sbjct: 481 QENASLVEESATAAQALQDQANQLADMVSTFKL 513 >tap [NT] COG0840 Methyl-accepting chemotaxis protein Eco Escherichia coli K12 Length = 533 Score = 218 bits (554), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 220/371 (59%), Gaps = 19/371 (5%) Query: 193 PLEALQAMLDTRTRA------DILQARQARERLDTVVAAVGGLLLLVMIVSVASLY---- 242 P++ Q D A +L+A A+ + + ++A L+ + MI+ VA++Y Sbjct: 151 PVQGSQNAFDVNFEAWQLEINHVLEAASAQSQRNYQISA---LVFISMII-VAAIYISSA 206 Query: 243 -----RLVTGPLSQAAQVASRVAKGDLCGRIDGGFHGETGQLLSSLQDMRQGLSHLVREV 297 +++ PL+ +A G+L I E + +SL+ M+Q L V +V Sbjct: 207 LWWTRKMIVQPLAIIGSHFDSIAAGNLARPIAVYGRNEITAIFASLKTMQQALRGTVSDV 266 Query: 298 RHGARVMRGSAAEIADGALNLSTRAAQQAGSLQQTAVAMEQLNQAVQQSADRAQQACSLT 357 R G++ M AEI G +LS+R QQA SL QTA +MEQL V Q+AD A+QA L Sbjct: 267 RKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVGQNADNARQASELA 326 Query: 358 RSAAQAALEGGVAVSEMVGNMHAVHLAAGRIEEIVAKLDGLSSQTNLLALNAAVEAAHAG 417 ++AA A GGV VS M M + ++ +I +I++ +DG++ QTN+LALNAAVEAA AG Sbjct: 327 KNAATTAQAGGVQVSTMTHTMQEIATSSQKIGDIISVIDGIAFQTNILALNAAVEAARAG 386 Query: 418 THGQAFSVVADEVRQLARRSADAAQEIRALLNDAMARINQGSRRAQTAGRSMQEVVAQVG 477 G+ F+VVA EVR LA RSA AA+EI+ L+ +++ R+ QGS+ A +M ++V+ V Sbjct: 387 EQGRGFAVVAGEVRNLASRSAQAAKEIKGLIEESVNRVQQGSKLVNNAAATMIDIVSSVT 446 Query: 478 RLNQLIGEVASASSQQSAGARRISQSVSAIDQATQRNVLLVQQSSAAAEAMRLATERMAA 537 R+N ++GE+ASAS +Q G +++Q+VS +DQ TQ+N LV++++ A E + + +++ Sbjct: 447 RVNDIMGEIASASEEQQRGIEQVAQAVSQMDQVTQQNASLVEEAAVATEQLANQADHLSS 506 Query: 538 LMARFRLETGE 548 +A F LE E Sbjct: 507 RVAVFTLEEHE 517 >Ztap [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escherichia coli O157:H7 EDL933 Length = 533 Score = 217 bits (553), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 132/332 (39%), Positives = 204/332 (61%), Gaps = 10/332 (3%) Query: 226 VGGLLLLVMIVSVASLY---------RLVTGPLSQAAQVASRVAKGDLCGRIDGGFHGET 276 + L+ + MI+ VA++Y +++ PL+ +A G+L I E Sbjct: 187 ISALVFISMII-VAAIYISSALWWTRKMIVQPLAIIGSHFDSIAAGNLARPIAVYGRNEI 245 Query: 277 GQLLSSLQDMRQGLSHLVREVRHGARVMRGSAAEIADGALNLSTRAAQQAGSLQQTAVAM 336 + +SL+ M+Q L V +VR G++ M AEI G +LS+R QQA SL QTA +M Sbjct: 246 TAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASM 305 Query: 337 EQLNQAVQQSADRAQQACSLTRSAAQAALEGGVAVSEMVGNMHAVHLAAGRIEEIVAKLD 396 EQL V Q+AD A+QA L ++AA A GGV VS M M + ++ +I +I++ +D Sbjct: 306 EQLTATVGQNADNARQASELAKNAATTAQAGGVQVSTMTHTMQEIATSSQKIGDIISVID 365 Query: 397 GLSSQTNLLALNAAVEAAHAGTHGQAFSVVADEVRQLARRSADAAQEIRALLNDAMARIN 456 G++ QTN+LALNAAVEAA AG G+ F+VVA EVR LA RSA AA+EI+ L+ +++ R+ Sbjct: 366 GIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKGLIEESVNRVQ 425 Query: 457 QGSRRAQTAGRSMQEVVAQVGRLNQLIGEVASASSQQSAGARRISQSVSAIDQATQRNVL 516 QGS+ A +M ++V+ V R+N ++GE+ASAS +Q G +++Q+VS +DQ TQ+N Sbjct: 426 QGSKLVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQNAS 485 Query: 517 LVQQSSAAAEAMRLATERMAALMARFRLETGE 548 LV++++ A E + + +++ +A F LE E Sbjct: 486 LVEEAAVATEQLANQADHLSSRVAVFTLEEHE 517 >ECs2595 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Escherichia coli O157:H7 Length = 533 Score = 217 bits (553), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 132/332 (39%), Positives = 204/332 (61%), Gaps = 10/332 (3%) Query: 226 VGGLLLLVMIVSVASLY---------RLVTGPLSQAAQVASRVAKGDLCGRIDGGFHGET 276 + L+ + MI+ VA++Y +++ PL+ +A G+L I E Sbjct: 187 ISALVFISMII-VAAIYISSALWWTRKMIVQPLAIIGSHFDSIAAGNLARPIAVYGRNEI 245 Query: 277 GQLLSSLQDMRQGLSHLVREVRHGARVMRGSAAEIADGALNLSTRAAQQAGSLQQTAVAM 336 + +SL+ M+Q L V +VR G++ M AEI G +LS+R QQA SL QTA +M Sbjct: 246 TAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASM 305 Query: 337 EQLNQAVQQSADRAQQACSLTRSAAQAALEGGVAVSEMVGNMHAVHLAAGRIEEIVAKLD 396 EQL V Q+AD A+QA L ++AA A GGV VS M M + ++ +I +I++ +D Sbjct: 306 EQLTATVGQNADNARQASELAKNAATTAQAGGVQVSTMTHTMQEIATSSQKIGDIISVID 365 Query: 397 GLSSQTNLLALNAAVEAAHAGTHGQAFSVVADEVRQLARRSADAAQEIRALLNDAMARIN 456 G++ QTN+LALNAAVEAA AG G+ F+VVA EVR LA RSA AA+EI+ L+ +++ R+ Sbjct: 366 GIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKGLIEESVNRVQ 425 Query: 457 QGSRRAQTAGRSMQEVVAQVGRLNQLIGEVASASSQQSAGARRISQSVSAIDQATQRNVL 516 QGS+ A +M ++V+ V R+N ++GE+ASAS +Q G +++Q+VS +DQ TQ+N Sbjct: 426 QGSKLVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQNAS 485 Query: 517 LVQQSSAAAEAMRLATERMAALMARFRLETGE 548 LV++++ A E + + +++ +A F LE E Sbjct: 486 LVEEAAVATEQLANQADHLSSRVAVFTLEEHE 517 >STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 553 Score = 216 bits (549), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 131/319 (41%), Positives = 210/319 (65%), Gaps = 3/319 (0%) Query: 229 LLLLVMIVSVASLYRL---VTGPLSQAAQVASRVAKGDLCGRIDGGFHGETGQLLSSLQD 285 +L+ V++V +A + + + P+++ + +A GDL RID E GQL +L+ Sbjct: 199 VLIAVLVVIIAVWFGIKLSLIAPMNRLIESIRHIASGDLVKRIDVEGSNEMGQLAENLRH 258 Query: 286 MRQGLSHLVREVRHGARVMRGSAAEIADGALNLSTRAAQQAGSLQQTAVAMEQLNQAVQQ 345 M+ L V +VR+GA + A+EIA G +LS+R QQA SL++TA +MEQL V+Q Sbjct: 259 MQSELMRTVGDVRNGANAIYSGASEIAMGNNDLSSRTEQQAASLEETAASMEQLTATVKQ 318 Query: 346 SADRAQQACSLTRSAAQAALEGGVAVSEMVGNMHAVHLAAGRIEEIVAKLDGLSSQTNLL 405 +A+ A+QA L SA++ A +GG V +V M + ++ +I +I++ +DG++ QTN+L Sbjct: 319 NAENARQASHLALSASETAQKGGKVVDNVVQTMRDIASSSQKIADIISVIDGIAFQTNIL 378 Query: 406 ALNAAVEAAHAGTHGQAFSVVADEVRQLARRSADAAQEIRALLNDAMARINQGSRRAQTA 465 ALNAAVEAA AG G+ F+VVA EVR LA+RSA AA+EI++L+ D+++R++ GS ++A Sbjct: 379 ALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVSRVDVGSTLVESA 438 Query: 466 GRSMQEVVAQVGRLNQLIGEVASASSQQSAGARRISQSVSAIDQATQRNVLLVQQSSAAA 525 G +M E+V V R+ ++GE+ASAS +QS G ++ +V+ +D+ TQ+N LV++S+AAA Sbjct: 439 GETMDEIVNAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNASLVEESAAAA 498 Query: 526 EAMRLATERMAALMARFRL 544 A+ R+ +A FR+ Sbjct: 499 AALEEQASRLTQAVAVFRI 517