BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0041.p (259 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl888 [E] COG1177 ABC-type spermidine/putrescine transport syst... 265 5e-71 SMb21275 [E] COG1177 ABC-type spermidine/putrescine transport sy... 253 3e-67 YPO2841 [E] COG1177 ABC-type spermidine/putrescine transport sys... 130 2e-30 mlr6080_2 [E] COG1177 ABC-type spermidine/putrescine transport s... 126 4e-29 SMb20381 [E] COG1177 ABC-type spermidine/putrescine transport sy... 124 2e-28 >AGl888 [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 259 Score = 265 bits (678), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 134/259 (51%), Positives = 185/259 (71%) Query: 1 MKQGLFPRVVLWAVMLFLLGPFIIVFLAGFSGGETLAFPPPSYSLRWIVSVLQAEEFRQA 60 M + LF + L V+ FL+GPF+I+ A FS G+TLAFPP +SL+WI V E FR++ Sbjct: 1 MTRQLFIPLTLLLVVGFLIGPFLIIVAASFSAGDTLAFPPQGFSLKWIAKVFTVESFRES 60 Query: 61 FGTSLQIGLLATVIALLLGVPVAYAMSRMPPPGMAVIKQVLTSPLIIPAMLVGLGLLRHF 120 F S+ + + T AL+LG+P +YAMSR P ++ ++++P+I+P ++VGL LLR+F Sbjct: 61 FAMSMFLAIGGTFTALILGIPASYAMSRYKLPFAETVRTIVSAPIIVPGIIVGLALLRYF 120 Query: 121 VLLVDAPVFLGLLIGHVGLLTPYAVRVVYSSLANLRVDIEEAAITLGATRLQTFRLVVLP 180 V+ + L L + H L+ PYAVRVV +SL NLR DIEEAA+ LG++RL F VVLP Sbjct: 121 VVPFGIGITLALFLAHTALILPYAVRVVSASLNNLRSDIEEAAVLLGSSRLGAFFRVVLP 180 Query: 181 NIRGAVIAAFFLAFVTSFNQVPVSLFLTGPGISTLPIEMLGHMENSFDPSIAALSTLLVL 240 NIRG +++AF L FVTSFNQVPVSLFL+GPG+ TLPI+MLG+ME FDPS+AALS+LL Sbjct: 181 NIRGGILSAFILGFVTSFNQVPVSLFLSGPGVRTLPIDMLGYMEIVFDPSVAALSSLLAF 240 Query: 241 FTMAFVLVTEKVLGISKYM 259 ++ V + E+ LG S+Y+ Sbjct: 241 LSIGIVFMAERFLGFSRYV 259 >SMb21275 [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II Sme Sinorhizobium meliloti Length = 259 Score = 253 bits (646), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 130/259 (50%), Positives = 176/259 (67%) Query: 1 MKQGLFPRVVLWAVMLFLLGPFIIVFLAGFSGGETLAFPPPSYSLRWIVSVLQAEEFRQA 60 M LFP VL V FL+GPF I+ A S GETLAFPP SL+W+ V + E FR++ Sbjct: 1 MNSRLFPVTVLVLVTAFLIGPFFIIVAASLSEGETLAFPPQGLSLKWVAKVFEVESFRES 60 Query: 61 FGTSLQIGLLATVIALLLGVPVAYAMSRMPPPGMAVIKQVLTSPLIIPAMLVGLGLLRHF 120 F S+ + + T AL LG+P +YA+SR P ++ V++ P+I+P ++VGL LLR+ Sbjct: 61 FAMSMLLAIGGTAAALALGIPASYALSRYRLPFGETVRTVVSLPIIVPGIIVGLALLRYL 120 Query: 121 VLLVDAPVFLGLLIGHVGLLTPYAVRVVYSSLANLRVDIEEAAITLGATRLQTFRLVVLP 180 V+ + L L + H L+ PYAVRVV +SL NLR DIEEAA+ LG++R F VV+P Sbjct: 121 VVPFGFNITLALFLAHTALVLPYAVRVVSASLNNLRSDIEEAAVLLGSSRAGAFFRVVMP 180 Query: 181 NIRGAVIAAFFLAFVTSFNQVPVSLFLTGPGISTLPIEMLGHMENSFDPSIAALSTLLVL 240 NIR ++AAF L FVTSFNQVPVSLFL+GPG+ TLPI+ML +ME ++DPS+AALS LL Sbjct: 181 NIRSGILAAFILGFVTSFNQVPVSLFLSGPGVRTLPIDMLSYMEVTYDPSVAALSALLAF 240 Query: 241 FTMAFVLVTEKVLGISKYM 259 ++ V + E+ LG S+Y+ Sbjct: 241 MSIGIVFLAERFLGFSRYV 259 >YPO2841 [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II Ype Yersinia pestis Length = 282 Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 130/227 (57%) Query: 13 AVMLFLLGPFIIVFLAGFSGGETLAFPPPSYSLRWIVSVLQAEEFRQAFGTSLQIGLLAT 72 A++LFL+ P +++ F+ G L++P +SLRW + ++E+ A G SL I LAT Sbjct: 29 AILLFLIVPVLVIVPLSFNAGSFLSYPMAGFSLRWYQTFFNSDEWLGALGNSLLIAPLAT 88 Query: 73 VIALLLGVPVAYAMSRMPPPGMAVIKQVLTSPLIIPAMLVGLGLLRHFVLLVDAPVFLGL 132 ++A LGV A + R G A++ +L SP++ P +++ +G+ F L +LGL Sbjct: 89 LLATGLGVLAAIGLVRGEFRGKALVMAMLISPMVAPVVIIAVGMFFFFARLSLLNSYLGL 148 Query: 133 LIGHVGLLTPYAVRVVYSSLANLRVDIEEAAITLGATRLQTFRLVVLPNIRGAVIAAFFL 192 ++ H L P+ V V + L + ++ AA +LGA++ + FR V LP I V + Sbjct: 149 VLAHALLGVPFVVITVTAVLKSYDQNLSRAAASLGASQWRVFRKVTLPLIAPGVFSGALF 208 Query: 193 AFVTSFNQVPVSLFLTGPGISTLPIEMLGHMENSFDPSIAALSTLLV 239 AF SF++V V+LFL P TLPI+M + + DP+IAA ++L+V Sbjct: 209 AFAVSFDEVVVTLFLASPRQRTLPIKMFAGIRENLDPTIAAAASLMV 255 >mlr6080_2 [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II Mlo Mesorhizobium loti Length = 277 Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 8/230 (3%) Query: 15 MLFLLGPFIIVFLAGFSGGETLAFPPPSYSLRWIVSVLQAEEFRQAFGTSLQIGLLATVI 74 M +LL P +V + FS G L FPP SLRW S + A TS+QIG+ V+ Sbjct: 23 MFYLLFPEAVVIIMSFSAGSVLEFPPSGLSLRWYRSFFDDPSWYGAAWTSIQIGVAVAVL 82 Query: 75 ALLLGVPVAYAMSRMPPPGMAVIKQVLTSPLIIPAMLVGL----GLLRHFVLLVDAPVFL 130 + ++G AY +SR P + + + +P+ IP ++VG+ GL ++ + L Sbjct: 83 STVVGTLAAYGISRARPQLRSSLTMAILTPITIPVIVVGVATYFGLANLGLIGSKTGIVL 142 Query: 131 GLLIGHVGLLTPYAVRVVYSSLANLRVDIEEAAITLGATRLQTFRLVVLPNIRGAVIAAF 190 IG +G Y V +V ++LAN +E+AA+++ A LQTF V LP IR +I Sbjct: 143 AHSIGAIG----YVVVIVSATLANFDRTLEQAAMSMRAGPLQTFMRVTLPLIRPGIIGGA 198 Query: 191 FLAFVTSFNQVPVSLFLTGPGISTLPIEMLGHMENSFDPSIAALSTLLVL 240 AF+ SF++V V+ F+ G + TLP++M ++ N DP++AA+++LL L Sbjct: 199 VFAFIHSFDEVVVTSFVGGFSMYTLPLKMWENIRNQIDPTVAAVASLLTL 248 >SMb20381 [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II Sme Sinorhizobium meliloti Length = 276 Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 123/232 (53%) Query: 17 FLLGPFIIVFLAGFSGGETLAFPPPSYSLRWIVSVLQAEEFRQAFGTSLQIGLLATVIAL 76 F+ P IV FS +LAFPPP Y+L+ V+ + Q SL IG + + Sbjct: 15 FVAAPMFIVIPMSFSSAASLAFPPPGYTLQNYVNFFSDPNWTQPLTNSLLIGFGTVCVTM 74 Query: 77 LLGVPVAYAMSRMPPPGMAVIKQVLTSPLIIPAMLVGLGLLRHFVLLVDAPVFLGLLIGH 136 L+ VP ++A+ R G V ++ P+I+P +++ LG +F L +LG+++ H Sbjct: 75 LVAVPASFALVRHVFIGRTVFNLLIMLPMIVPTIVMALGYYIYFGQLRLVQSYLGVILAH 134 Query: 137 VGLLTPYAVRVVYSSLANLRVDIEEAAITLGATRLQTFRLVVLPNIRGAVIAAFFLAFVT 196 + P + ++ ++L +E AA+ LGA+ TFRL+ P +R A A AF+ Sbjct: 135 SCIALPMSTLILTAALKGFDRSVERAAMNLGASPFATFRLITFPILRPAFTVAGLFAFIA 194 Query: 197 SFNQVPVSLFLTGPGISTLPIEMLGHMENSFDPSIAALSTLLVLFTMAFVLV 248 SF++ ++LF++G +TLP +M + DP+I+A S+ L L +A V + Sbjct: 195 SFDEAVIALFISGRDKATLPRQMFNAVRQEADPTISAASSFLFLLVLAGVCI 246