BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0025.p (323 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4571_2 [C] COG3258 Cytochrome c Pae Pseudomonas aeruginosa 349 6e-96 BMEII0895 Non COG 189 6e-48 Cj0874c [C] COG3258 Cytochrome c Cje Campylobacter jejuni 153 4e-37 PA2481 [C] COG3258 Cytochrome c Pae Pseudomonas aeruginosa 153 7e-37 sll1359_2 [C] COG3258 Cytochrome c Syn Synechocystis 135 1e-31 >PA4571_2 [C] COG3258 Cytochrome c Pae Pseudomonas aeruginosa Length = 234 Score = 349 bits (895), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 157/234 (67%), Positives = 192/234 (82%) Query: 90 LILGARLNIETGRLLPQHVGNGLNCASCHLNAGTVGGGSPYVGVSAAFPTYAARAGRVIT 149 ++ G RL++ET LLP +VGN L+C SCHLNAGTV GSP+VGVSA FP+YA RAG+VI Sbjct: 1 VVRGMRLHLETRELLPANVGNQLHCTSCHLNAGTVADGSPFVGVSAFFPSYAPRAGKVIG 60 Query: 150 LEDRINGCFPRSMNGKPLPPGSQDMQAMLAYIEWMRRDAQPGEKVPGRGIGKIDQKLKPD 209 LE+RINGCF RSMNGKPLPP S DMQAM+AY +WM+ + +P +KV GRG+GK+D LKPD Sbjct: 61 LEERINGCFRRSMNGKPLPPDSADMQAMVAYFDWMKNNTRPQDKVAGRGVGKVDPALKPD 120 Query: 210 PVNGERIYHAQCAACHGAQGEGIRSPSGQWVYPALWGAQSFNIGAGMARTYTAAAFVKRN 269 P NG ++Y QC CHG GEG+R+ +G+ ++P LWG +SFNIGAGMART+TAAAFVK N Sbjct: 121 PENGRKVYARQCVVCHGENGEGLRNSAGEMLFPPLWGDESFNIGAGMARTFTAAAFVKHN 180 Query: 270 MPIALHDRFPLGQGGLSDQEAVDVAEFFTHQPRPDFAPKTRDWPRDKKPADARY 323 MPI +RFPLGQGGLSDQ+AVDVAE+F+HQPRPDF K +DWP+DK+P DARY Sbjct: 181 MPIGFQERFPLGQGGLSDQDAVDVAEYFSHQPRPDFPDKIKDWPKDKRPLDARY 234 >BMEII0895 Non COG Length = 314 Score = 189 bits (481), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 105/236 (44%), Positives = 142/236 (60%), Gaps = 10/236 (4%) Query: 94 ARLNIETGRLLPQHVGNGLNCASCHLNAGTVGGGSPYVGVSAAFPTYAARAGRVITLEDR 153 A + E + GN L+C +CHL AGT G P VGV FP Y +R G++ T+EDR Sbjct: 51 AHIGPEVADEAKRFAGNNLSCQNCHLEAGTKQYGLPLVGVYGDFPQYRSREGQIGTIEDR 110 Query: 154 INGCFPRSMNGKPLPPGSQDMQAMLAYIEWMRRDAQPGEKVPGRGIGKIDQ-KLKPDPVN 212 INGC RS+NG+PLP S +M+AM+AYI+++ GE+ GRG GK+ + K DPV+ Sbjct: 111 INGCMTRSLNGEPLPLDSAEMKAMVAYIKYVSAGTVVGEETKGRGSGKMPELKRAADPVH 170 Query: 213 GERIYHAQCAACHGAQGEGIRS----PSGQWVYPALWGAQSFNIGAGMARTYTAAAFVKR 268 GE++Y CAACHGA G+G R+ + + +P LWG SFN GAGM R +AA F+ Sbjct: 171 GEKLYAEICAACHGADGQGKRTGVVGDAKSYEFPPLWGPDSFNDGAGMNRLISAANFIHA 230 Query: 269 NMPIALHDRFPLGQGGLSDQEAVDVAEFFTHQPRPDFAPKTRDWP-RDKKPADARY 323 NMP + L + L ++A D+A FF +PRP A D+P R +KP DA Y Sbjct: 231 NMPNGVS----LEEPQLEPEDAWDIAAFFQSKPRPAKANLQNDFPNRLEKPVDASY 282 >Cj0874c [C] COG3258 Cytochrome c Cje Campylobacter jejuni Length = 186 Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 76/160 (47%), Positives = 101/160 (63%), Gaps = 4/160 (2%) Query: 103 LLPQHVGNGLNCASCHLNAGTVGGGSPYVGVSAAFPTYAARAGRVITLEDRINGCFPRSM 162 L + GN L+C+SCH N G+V S +VG+ A FP Y AR +VITL DRINGCF RS Sbjct: 9 LKKRFAGNNLSCSSCHANGGSVQNQSGFVGIWARFPQYNARGDKVITLADRINGCFERST 68 Query: 163 NGKPLPPGSQDMQAMLAYIEWMRRDAQPGEKVPGRGIGKIDQKLK-PDPVNGERIYHAQC 221 NGK +P + +M+AML Y++W+ + G K+ G+G+ KID LK DP G+ IY +C Sbjct: 69 NGKRMPSDTPEMKAMLTYMQWLSQGVPVGAKIEGQGLKKIDFILKAADPKKGKAIYMDKC 128 Query: 222 AACHGAQGEGIR---SPSGQWVYPALWGAQSFNIGAGMAR 258 A CH G G++ S ++YP LWG S+N GAGM R Sbjct: 129 AVCHQENGLGLKNEDSTGAYYLYPPLWGDDSYNTGAGMYR 168 >PA2481 [C] COG3258 Cytochrome c Pae Pseudomonas aeruginosa Length = 291 Score = 153 bits (386), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 89/232 (38%), Positives = 122/232 (52%), Gaps = 9/232 (3%) Query: 73 FEAPRLADMLKEKNATQLILGARLNIETGRLLPQHVGNGLNCASCHLNAGTVGGGSPYVG 132 F+ P + + + G L +ET + P VGN LNC +CHL+ G +P Sbjct: 29 FQPPAESSLPDNAFGEMVRQGQALFVETRKNAPHLVGNQLNCVNCHLDQGRRANSAPQWA 88 Query: 133 VSAAFPTYAARAGRVITLEDRINGCFPRSMNGKPLPPGSQDMQAMLAYIEWMRRDAQPGE 192 +P + A+ +V T +R+ GCF SMNGK S +++A+ Y W+ A G Sbjct: 89 AYPVYPAFRAKNNKVNTFAERLQGCFQFSMNGKVPAADSPEIKALTVYAYWLASQAPTGV 148 Query: 193 KVPGRGIGKIDQKLKPDPVN-GERIYHAQCAACHGAQGEGIRSPSGQWVYPALWGAQSFN 251 +PGRG + + G ++Y AQCA CHGA G+G + GQ V+P LWGAQSFN Sbjct: 149 SLPGRGYPDVAPPEGGYSIERGAKVYAAQCAICHGADGQG-QMALGQTVFPPLWGAQSFN 207 Query: 252 IGAGMARTYTAAAFVKRNMPIALHDRFPLGQGGLSDQEAVDVAEFFTHQPRP 303 GAGM R TAA+F+K NMP+ G LSD++A DVA F RP Sbjct: 208 WGAGMHRINTAASFIKYNMPLG-------KPGTLSDRDAWDVAAFMNSHERP 252 >sll1359_2 [C] COG3258 Cytochrome c Syn Synechocystis Length = 238 Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 116/222 (52%), Gaps = 24/222 (10%) Query: 90 LILGARLNIETGRLLPQHVGNG-LNCASCHLNAGTVGGGSPYVGVSAAFPTYAARAGRVI 148 ++ G +L ET +P+ V L+CASCHLNAG S + G+ + + I Sbjct: 27 ILRGYQLTTETYEEMPEFVLTAKLHCASCHLNAGANPKASSWFGMMKKY-----QYPETI 81 Query: 149 TLEDRINGCFPRSMNGKPLP--PGSQDMQAMLAYIEWMRRDAQPGE----KVPGRGIGKI 202 L+ RIN CF S+NGKPL S D QA ++Y++W+ A+ K P I K Sbjct: 82 NLQKRINLCFEHSLNGKPLTITADSPDFQAFISYMQWLDEQAEVLNIDLPKTPYPPIAK- 140 Query: 203 DQKLKPDPVNGERIYHAQCAACHGAQGEGIRSPSGQWVYPALWGAQSFNIGAGMARTYTA 262 L +P G+ I+ +CA CHGA G+G R S + PALWG SFN AGMAR T Sbjct: 141 ---LTGNPNQGQAIFEQKCAFCHGALGQG-RYGSDTYYRPALWGPNSFNRQAGMARINTL 196 Query: 263 AAFVKRNMPIALHDRFPLGQGGLSDQEAVDVAEFFTHQPRPD 304 A F+ NMP G L+DQEA D+A + QPRP+ Sbjct: 197 AEFIHGNMPYQF-------DGVLTDQEAWDLATYIDGQPRPE 231