BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0020.p (223 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3404 [TK] COG0745 Response regulators consisting of a CheY-li... 264 9e-71 RSp1554 [TK] COG0745 Response regulators consisting of a CheY-li... 213 3e-55 PA4776 [TK] COG0745 Response regulators consisting of a CheY-lik... 201 1e-51 ygiX [TK] COG0745 Response regulators consisting of a CheY-like ... 195 6e-50 ECs3907 [TK] COG0745 Response regulators consisting of a CheY-li... 195 8e-50 >RSc3404 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 221 Score = 264 bits (675), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 149/220 (67%), Positives = 168/220 (76%), Gaps = 1/220 (0%) Query: 1 MRILLVEDDAMIGEEVRAALREASYAADWVRDGNAAHAALDQQDYDAVLLDLGLPGADGL 60 MR+LL+EDD MIG V AALR+A+YA DWVRDG A Q YD +LLDLGLPG DG Sbjct: 1 MRVLLIEDDPMIGAVVEAALRDAAYAVDWVRDGRTAVDVSAHQHYDLLLLDLGLPGQDGH 60 Query: 61 SVLRQMR-RHATTPVLILTARDGVQDRIDGLDSGADDYILKPFAMGELLARLRAVMRRKS 119 +VLR +R R PVLILTARD V +R+ GLD GADDY+LKPF M ELLAR+RAV+RR+ Sbjct: 61 AVLRTLRARDNPVPVLILTARDAVDERVRGLDGGADDYVLKPFEMVELLARMRAVLRRRG 120 Query: 120 GAATVVLDNGELSLDLADKTARWQGQPPVALSAREFALLQALMHRPGAILSRSELEERIY 179 GAA+ VL NG LSLD A R PV LS REFALLQALM RPGAILSR ELEERIY Sbjct: 121 GAASPVLSNGVLSLDPATHEVRAGDGEPVRLSGREFALLQALMLRPGAILSRGELEERIY 180 Query: 180 GWGEEVESNAVEFLIHALRKKLDRTAIRNVRGMGWMVARG 219 GWG EV SNAVEFLIHALRKKL +I+NVRG+GWMV++G Sbjct: 181 GWGHEVASNAVEFLIHALRKKLGAESIKNVRGVGWMVSKG 220 >RSp1554 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 246 Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 115/233 (49%), Positives = 156/233 (66%), Gaps = 11/233 (4%) Query: 1 MRILLVEDDAMIGEEVRAALREASYAADWVRDGNAAHAALDQQD---------YDAVLLD 51 MR+LLVEDD MIGE VR LR+ +A DWVRDG AA A+ +D +LLD Sbjct: 4 MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRDGEAAVQAIGAPGAASEAGGSMFDLMLLD 63 Query: 52 LGLPGADGLSVLRQMRRHATT-PVLILTARDGVQDRIDGLDSGADDYILKPFAMGELLAR 110 LGLP DGL V+ ++RR T P+LILTARD V DR+ GL++GADDY++KPF + EL AR Sbjct: 64 LGLPKRDGLDVVHEVRRRGITLPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAAR 123 Query: 111 LRAVMRRKSGAATVVLDNGELSLDLADKTARWQGQPPVALSAREFALLQALMHRPGAILS 170 + A++RR+ G A ++ +GE+ L+ + G P + LS REFA+L AL+ RPG + S Sbjct: 124 MHALLRRQGGRADPLMRHGEVLLNPVTREVLRAGMP-IKLSGREFAVLHALLSRPGKVWS 182 Query: 171 RSELEERIYGWGEEVESNAVEFLIHALRKKLDRTAIRNVRGMGWMVARGASAS 223 ++L++ +YGW EEV SN VE IHALRKKL I+N+RG+G+++ R A Sbjct: 183 IAQLQDNLYGWDEEVGSNTVEVYIHALRKKLGSHFIQNIRGVGYVIPREAPTP 235 >PA4776 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 221 Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 110/221 (49%), Positives = 147/221 (66%), Gaps = 2/221 (0%) Query: 1 MRILLVEDDAMIGEEVRAALREASYAADWVRDGNAAHAALDQQDYDAVLLDLGLPGADGL 60 MRILL EDD ++G+ +RA LR +WV DG AA AL ++D ++LD+GLP GL Sbjct: 1 MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLVLDIGLPRRSGL 60 Query: 61 SVLRQMRRHAT-TPVLILTARDGVQDRIDGLDSGADDYILKPFAMGELLARLRAVMRRKS 119 +LR +R TPVL+LTARD V DR+ GLDSGADDY+ KPF + EL AR+RA+ RR + Sbjct: 61 DILRNLRHQGLLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRTT 120 Query: 120 GAATVVLDNGELSLDLADKTARWQGQPPVALSAREFALLQALMHRPGAILSRSELEERIY 179 G A L +GEL LD A GQ V L+ RE+ALL+ L+ G +LSR++LE+ +Y Sbjct: 121 GRALPQLVHGELRLDPATHQVTLSGQ-AVELAPREYALLRLLLENSGKVLSRNQLEQSLY 179 Query: 180 GWGEEVESNAVEFLIHALRKKLDRTAIRNVRGMGWMVARGA 220 GW +VESNA+E +H LR+KL IR VRG+G+ + + A Sbjct: 180 GWSGDVESNAIEVHVHHLRRKLGNQLIRTVRGIGYGIDQPA 220 >ygiX [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 219 Score = 195 bits (496), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 103/218 (47%), Positives = 140/218 (64%), Gaps = 2/218 (0%) Query: 1 MRILLVEDDAMIGEEVRAALREASYAADWVRDGNAAHAALDQQDYDAVLLDLGLPGADGL 60 MRILL+EDD +IG+ ++ L + ++ DW G AL YDAV+LDL LPG DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 SVLRQMRRHAT-TPVLILTARDGVQDRIDGLDSGADDYILKPFAMGELLARLRAVMRRKS 119 +LR+ R PVLILTARD + +R++GL GADDY+ KPFA+ E+ ARL A+MRR + Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 120 GAATVVLDNGELSLDLADKTARWQGQPPVALSAREFALLQALMHRPGAILSRSELEERIY 179 G A+ L +G + LD + A G+ P+ L +EFALL+ LM G +LSR +EE++Y Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGE-PLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 Query: 180 GWGEEVESNAVEFLIHALRKKLDRTAIRNVRGMGWMVA 217 W EEV SNAVE +H LR+KL IR V G+G+ + Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 >ECs3907 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ecs Escherichia coli O157:H7 Length = 219 Score = 195 bits (495), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 102/218 (46%), Positives = 140/218 (64%), Gaps = 2/218 (0%) Query: 1 MRILLVEDDAMIGEEVRAALREASYAADWVRDGNAAHAALDQQDYDAVLLDLGLPGADGL 60 MRILL+EDD +IG+ ++ L + ++ DW G AL YDAV+LDL LPG DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 SVLRQMRRHAT-TPVLILTARDGVQDRIDGLDSGADDYILKPFAMGELLARLRAVMRRKS 119 +LR+ R PVLILTARD +++R++GL GADDY+ KPFA+ E+ ARL A+MRR + Sbjct: 61 DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 120 GAATVVLDNGELSLDLADKTARWQGQPPVALSAREFALLQALMHRPGAILSRSELEERIY 179 G A+ L +G + LD + A G+ P+ L +EFALL+ LM G +L R +EE++Y Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGE-PLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 180 GWGEEVESNAVEFLIHALRKKLDRTAIRNVRGMGWMVA 217 W EEV SNAVE +H LR+KL IR V G+G+ + Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217